PcyM_0502000 | lysophospholipase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0502000OTHER0.9999840.0000110.000005
No Results

  • Fasta :-

    >PcyM_0502000 MTDSTIYDQEIDVKPYTKLDGKPRLDAFFNKDGLLLRSYGWLVRNAIGIIILIHGLGSHA RLSFLRHNIEIVSKDKAILKDGNNFYVYKDSWIEHFNKSGYSVYALDLQGHGLSDGWDNL KANVKKFDDFAFDVLQYIAKIQDSLVYGDNQDDATSSDNVDQKINKKRLPTYIVGMSMGG NIALRTLQLLGKSQSDANKRLNIKGCVSISGMISVELLTSPGSHTYQLFFLPLSNIISDF FQNSRLISVLPFQRYPYINDILKFDQIRFKGGITYRFGRELLNAMGNLDMDIGYTPRSIP ILFIHSKDDPFCYWRGVVSFYNRLNVRNKELHLLENMEHVLTVEPGNMKVLSSVLDWLAS ISGGEIKDKPNDDQQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0502000.fa Sequence name : PcyM_0502000 Sequence length : 375 VALUES OF COMPUTED PARAMETERS Coef20 : 3.094 CoefTot : 0.000 ChDiff : 0 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.571 0.202 0.623 MesoH : -0.132 0.400 -0.275 0.236 MuHd_075 : 32.567 16.569 8.893 6.853 MuHd_095 : 19.751 6.477 4.597 2.001 MuHd_100 : 18.053 6.612 4.682 2.406 MuHd_105 : 8.351 5.408 3.272 2.124 Hmax_075 : 2.800 5.950 -1.018 3.232 Hmax_095 : 6.913 3.237 -0.543 2.100 Hmax_100 : 4.500 1.800 -0.757 1.760 Hmax_105 : -5.900 -0.350 -2.977 1.248 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9811 0.0189 DFMC : 0.9702 0.0298
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 375 PcyM_0502000 MTDSTIYDQEIDVKPYTKLDGKPRLDAFFNKDGLLLRSYGWLVRNAIGIIILIHGLGSHARLSFLRHNIEIVSKDKAILK 80 DGNNFYVYKDSWIEHFNKSGYSVYALDLQGHGLSDGWDNLKANVKKFDDFAFDVLQYIAKIQDSLVYGDNQDDATSSDNV 160 DQKINKKRLPTYIVGMSMGGNIALRTLQLLGKSQSDANKRLNIKGCVSISGMISVELLTSPGSHTYQLFFLPLSNIISDF 240 FQNSRLISVLPFQRYPYINDILKFDQIRFKGGITYRFGRELLNAMGNLDMDIGYTPRSIPILFIHSKDDPFCYWRGVVSF 320 YNRLNVRNKELHLLENMEHVLTVEPGNMKVLSSVLDWLASISGGEIKDKPNDDQQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0502000 14 DQEIDVK|PY 0.059 . PcyM_0502000 18 DVKPYTK|LD 0.060 . PcyM_0502000 22 YTKLDGK|PR 0.059 . PcyM_0502000 24 KLDGKPR|LD 0.080 . PcyM_0502000 31 LDAFFNK|DG 0.066 . PcyM_0502000 37 KDGLLLR|SY 0.132 . PcyM_0502000 44 SYGWLVR|NA 0.096 . PcyM_0502000 61 GLGSHAR|LS 0.088 . PcyM_0502000 66 ARLSFLR|HN 0.092 . PcyM_0502000 74 NIEIVSK|DK 0.067 . PcyM_0502000 76 EIVSKDK|AI 0.066 . PcyM_0502000 80 KDKAILK|DG 0.061 . PcyM_0502000 89 NNFYVYK|DS 0.081 . PcyM_0502000 98 WIEHFNK|SG 0.074 . PcyM_0502000 121 DGWDNLK|AN 0.061 . PcyM_0502000 125 NLKANVK|KF 0.063 . PcyM_0502000 126 LKANVKK|FD 0.171 . PcyM_0502000 140 VLQYIAK|IQ 0.065 . PcyM_0502000 163 SDNVDQK|IN 0.082 . PcyM_0502000 166 VDQKINK|KR 0.054 . PcyM_0502000 167 DQKINKK|RL 0.087 . PcyM_0502000 168 QKINKKR|LP 0.235 . PcyM_0502000 185 GGNIALR|TL 0.086 . PcyM_0502000 192 TLQLLGK|SQ 0.095 . PcyM_0502000 199 SQSDANK|RL 0.074 . PcyM_0502000 200 QSDANKR|LN 0.176 . PcyM_0502000 204 NKRLNIK|GC 0.063 . PcyM_0502000 245 DFFQNSR|LI 0.082 . PcyM_0502000 254 SVLPFQR|YP 0.073 . PcyM_0502000 263 YINDILK|FD 0.064 . PcyM_0502000 268 LKFDQIR|FK 0.130 . PcyM_0502000 270 FDQIRFK|GG 0.070 . PcyM_0502000 276 KGGITYR|FG 0.107 . PcyM_0502000 279 ITYRFGR|EL 0.241 . PcyM_0502000 297 DIGYTPR|SI 0.127 . PcyM_0502000 307 ILFIHSK|DD 0.065 . PcyM_0502000 315 DPFCYWR|GV 0.102 . PcyM_0502000 323 VVSFYNR|LN 0.074 . PcyM_0502000 327 YNRLNVR|NK 0.082 . PcyM_0502000 329 RLNVRNK|EL 0.082 . PcyM_0502000 349 VEPGNMK|VL 0.066 . PcyM_0502000 367 ISGGEIK|DK 0.069 . PcyM_0502000 369 GGEIKDK|PN 0.083 . ____________________________^_________________

  • Fasta :-

    >PcyM_0502000 ATGACTGATAGTACGATATACGACCAAGAAATAGATGTAAAACCTTACACTAAACTGGAT GGAAAGCCAAGGCTTGATGCATTCTTTAATAAGGATGGGTTGTTGTTACGCTCGTACGGA TGGCTAGTGAGAAATGCTATAGGCATTATAATATTAATTCATGGTTTAGGTTCACATGCG AGATTGTCCTTTTTAAGACATAATATTGAGATAGTAAGTAAAGATAAAGCCATATTAAAA GATGGAAATAATTTTTACGTTTATAAAGACAGTTGGATAGAACATTTTAATAAAAGCGGC TATTCAGTGTATGCATTAGATTTACAAGGTCATGGATTGTCTGATGGATGGGACAATCTA AAAGCTAACGTAAAAAAGTTTGATGATTTTGCCTTCGACGTATTGCAGTATATTGCTAAA ATTCAAGACTCATTGGTTTATGGTGATAATCAGGATGACGCAACTTCTTCTGATAATGTT GACCAAAAAATTAATAAGAAAAGGCTTCCAACATACATTGTGGGTATGTCCATGGGAGGA AATATTGCATTAAGGACATTACAATTATTGGGGAAGTCCCAAAGCGATGCAAATAAAAGG TTAAATATAAAAGGGTGTGTCTCCATATCTGGAATGATTTCTGTTGAATTATTAACATCC CCAGGTTCACATACGTATCAATTATTTTTTTTACCCTTATCGAATATTATTTCTGATTTT TTTCAAAACTCAAGACTTATTTCGGTGTTGCCTTTTCAAAGGTATCCATACATTAACGAC ATTTTAAAGTTTGATCAAATACGTTTCAAAGGAGGGATAACCTATCGATTTGGTCGCGAA CTTCTAAATGCAATGGGGAACTTAGACATGGACATAGGATATACTCCTAGGAGTATTCCT ATTTTGTTTATTCATTCAAAAGATGACCCATTTTGTTATTGGCGAGGCGTTGTATCGTTT TATAATAGACTGAATGTTCGTAATAAAGAGTTGCATCTTTTAGAAAACATGGAGCATGTA TTAACTGTGGAACCGGGAAATATGAAAGTTTTAAGTAGTGTTTTGGACTGGCTCGCTAGC ATATCCGGAGGTGAAATAAAAGACAAACCGAATGATGATCAACAATGA
  • Download Fasta

  • Fasta :-

    MTDSTIYDQEIDVKPYTKLDGKPRLDAFFNKDGLLLRSYGWLVRNAIGIIILIHGLGSHA RLSFLRHNIEIVSKDKAILKDGNNFYVYKDSWIEHFNKSGYSVYALDLQGHGLSDGWDNL KANVKKFDDFAFDVLQYIAKIQDSLVYGDNQDDATSSDNVDQKINKKRLPTYIVGMSMGG NIALRTLQLLGKSQSDANKRLNIKGCVSISGMISVELLTSPGSHTYQLFFLPLSNIISDF FQNSRLISVLPFQRYPYINDILKFDQIRFKGGITYRFGRELLNAMGNLDMDIGYTPRSIP ILFIHSKDDPFCYWRGVVSFYNRLNVRNKELHLLENMEHVLTVEPGNMKVLSSVLDWLAS ISGGEIKDKPNDDQQ

    No Results
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India