PcyM_0521400 | 26S proteasome AAA-ATPase subunit RPT3, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0521400OTHER0.9999940.0000020.000003
No Results

  • Fasta :-

    >PcyM_0521400 MDNISKYLKEEDYYIKLKILKKQIDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPL IIGQFLDIIDNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSES DSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILIYGP PGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEV DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRL DRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAI RKNRYIITANDFEQGYRTHVRKQLRDYEFYNI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0521400.fa Sequence name : PcyM_0521400 Sequence length : 392 VALUES OF COMPUTED PARAMETERS Coef20 : 3.228 CoefTot : 0.000 ChDiff : 2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.041 1.147 0.033 0.542 MesoH : -0.641 0.275 -0.389 0.228 MuHd_075 : 20.586 9.162 5.664 2.823 MuHd_095 : 24.257 18.077 7.576 4.843 MuHd_100 : 25.058 18.534 7.565 5.641 MuHd_105 : 30.996 20.272 8.792 7.022 Hmax_075 : -12.367 -0.100 -4.668 0.747 Hmax_095 : -5.000 6.500 -2.717 1.960 Hmax_100 : -4.400 6.900 -2.163 2.720 Hmax_105 : -5.250 4.113 -3.070 2.467 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8760 0.1240 DFMC : 0.8935 0.1065
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 392 PcyM_0521400 MDNISKYLKEEDYYIKLKILKKQIDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDIIDNNYGIVSSTA 80 GSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKS 160 PELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEV 240 DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQT 320 IISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRKQLRDYEFYNI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0521400 6 -MDNISK|YL 0.059 . PcyM_0521400 9 NISKYLK|EE 0.064 . PcyM_0521400 16 EEDYYIK|LK 0.053 . PcyM_0521400 18 DYYIKLK|IL 0.069 . PcyM_0521400 21 IKLKILK|KQ 0.065 . PcyM_0521400 22 KLKILKK|QI 0.112 . PcyM_0521400 35 IQEEYIK|EE 0.060 . PcyM_0521400 39 YIKEEHK|NL 0.062 . PcyM_0521400 42 EEHKNLK|RE 0.054 . PcyM_0521400 43 EHKNLKR|EL 0.136 . PcyM_0521400 47 LKRELIR|SK 0.137 . PcyM_0521400 49 RELIRSK|NE 0.059 . PcyM_0521400 53 RSKNEIK|RI 0.066 . PcyM_0521400 54 SKNEIKR|IQ 0.190 . PcyM_0521400 87 GSNYYVR|IL 0.107 . PcyM_0521400 94 ILSTLNK|ED 0.058 . PcyM_0521400 98 LNKEDLK|PS 0.058 . PcyM_0521400 107 VSVALHR|HS 0.101 . PcyM_0521400 132 LLQVSER|PN 0.094 . PcyM_0521400 136 SERPNVK|YT 0.076 . PcyM_0521400 147 GGLDTQK|QE 0.058 . PcyM_0521400 151 TQKQEMR|EA 0.091 . PcyM_0521400 159 AVELPLK|SP 0.071 . PcyM_0521400 166 SPELYEK|IG 0.062 . PcyM_0521400 185 GPPGTGK|TM 0.058 . PcyM_0521400 190 GKTMLVK|AV 0.074 . PcyM_0521400 211 GSEFVQK|YL 0.136 . PcyM_0521400 218 YLGEGPR|MV 0.154 . PcyM_0521400 221 EGPRMVR|DV 0.294 . PcyM_0521400 225 MVRDVFR|LA 0.120 . PcyM_0521400 228 DVFRLAR|EN 0.259 . PcyM_0521400 246 VDAIATK|RF 0.064 . PcyM_0521400 247 DAIATKR|FD 0.186 . PcyM_0521400 256 AQTGADR|EV 0.095 . PcyM_0521400 260 ADREVQR|IL 0.115 . PcyM_0521400 274 QMDGFDK|ST 0.080 . PcyM_0521400 279 DKSTNVK|VI 0.070 . PcyM_0521400 286 VIMATNR|AD 0.076 . PcyM_0521400 296 LDPALLR|PG 0.069 . PcyM_0521400 299 ALLRPGR|LD 0.217 . PcyM_0521400 302 RPGRLDR|KI 0.309 . PcyM_0521400 303 PGRLDRK|IE 0.069 . PcyM_0521400 311 EFPLPDR|KQ 0.064 . PcyM_0521400 312 FPLPDRK|QK 0.075 . PcyM_0521400 314 LPDRKQK|RL 0.141 . PcyM_0521400 315 PDRKQKR|LI 0.299 . PcyM_0521400 324 FQTIISK|MN 0.055 . PcyM_0521400 339 IENFVVR|TD 0.094 . PcyM_0521400 342 FVVRTDK|IS 0.108 . PcyM_0521400 361 AGMQAIR|KN 0.081 . PcyM_0521400 362 GMQAIRK|NR 0.079 . PcyM_0521400 364 QAIRKNR|YI 0.431 . PcyM_0521400 377 DFEQGYR|TH 0.064 . PcyM_0521400 381 GYRTHVR|KQ 0.079 . PcyM_0521400 382 YRTHVRK|QL 0.137 . PcyM_0521400 385 HVRKQLR|DY 0.126 . ____________________________^_________________

  • Fasta :-

    >PcyM_0521400 ATGGATAACATTAGCAAGTATCTGAAGGAGGAGGACTACTACATTAAGCTGAAAATTTTA AAGAAGCAAATTGATATCCTGAATATACAGGAGGAGTACATCAAGGAGGAGCACAAGAAC CTGAAGAGGGAGCTGATCAGGTCGAAGAACGAAATCAAGCGCATACAAAGTGTGCCGCTC ATAATAGGCCAATTTCTGGACATAATTGATAATAACTACGGGATCGTGAGTAGCACAGCC GGGTCGAACTACTACGTTCGAATTCTTTCCACTTTGAATAAGGAAGACTTAAAGCCATCA GTTAGTGTGGCGTTACACCGACACAGCCATTCCATTGTGAACATACTTCCATCCGAGTCG GATAGCAGCATACAGTTACTACAAGTGAGTGAGAGACCAAATGTGAAGTACACAGACTTA GGAGGACTAGACACACAGAAGCAGGAAATGAGAGAAGCTGTAGAATTGCCTCTAAAGAGT CCAGAGTTGTATGAAAAGATCGGAATAGAACCCCCCATGGGGATCTTAATATATGGACCA CCAGGTACAGGGAAGACAATGCTTGTTAAGGCAGTAGCTAATGAGACACAAGTTACATTT ATCGGTGTTGTGGGTTCTGAATTTGTGCAGAAGTATTTAGGAGAAGGTCCAAGAATGGTT AGAGATGTATTCAGACTAGCCAGAGAAAATTCACCTTCTATCATATTTATTGATGAAGTA GATGCAATAGCTACAAAAAGATTTGATGCACAAACAGGAGCAGATAGAGAGGTTCAAAGA ATTCTTCTTGAATTATTGAATCAAATGGATGGGTTCGACAAATCAACTAATGTAAAAGTC ATCATGGCGACGAATAGGGCAGATACATTAGATCCTGCATTGTTGAGACCAGGGAGACTT GATAGAAAAATTGAGTTTCCTCTCCCAGATAGGAAACAAAAAAGACTCATTTTTCAGACC ATTATTAGCAAAATGAATGTTAGCAGTGATGTCAATATTGAGAATTTTGTCGTGAGGACT GATAAGATAAGTGCTGCCGATATTGCTGCCATTGCACAGGAGGCTGGCATGCAAGCCATA CGGAAGAATCGCTACATCATCACGGCGAATGACTTCGAACAGGGGTACCGCACGCATGTC CGCAAGCAGCTGCGCGATTACGAGTTTTACAATATATAG
  • Download Fasta

  • Fasta :-

    MDNISKYLKEEDYYIKLKILKKQIDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPL IIGQFLDIIDNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSES DSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILIYGP PGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEV DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRL DRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAI RKNRYIITANDFEQGYRTHVRKQLRDYEFYNI

  • title: ATP binding site
  • coordinates: P180,P181,G182,T183,G184,K185,T186,M187,D238,N285
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India