PcyM_0623300 | aspartyl protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0623300SP0.2042700.7482370.047494CS pos: 23-24. TFS-LP. Pr: 0.6619
No Results

  • Fasta :-

    >PcyM_0623300 MTPNFVARIGLLCLLNIWLSTFSLPLLKNGGGSRFYIASQGVDKMRRESPHRAHGDLPSE RVNQKNNPILIKLIKQDIPSKKMTTYYGQVAVGEKSENVMNVLFDTGSTEFWIPFENCKG DNFPNSHNKYKRTKSFRNKFNKEGLPTLLEVSYLSGKVIGFDGYDTIKLGHNLSVPNTNI AFATKIEIPVLEEFKWDGILGLGFENADSRQRGMKPFLDHLKDENILTEMGYKNQFGYYL SDRGGFISFGGVDNRLKRSPEEEVMWSPVSTEMGFWTIDIVGVRKEYAANVNVKRDEDEV VVKYEGFHDGGNKSIVDTGTFFIYAPKKTMQSYLNELEINSCEDKEKLPYIVFQIKSKGV EGIKGSAIIELVLSPNDYVIEYLNEENWTRECVVGIQADEQKDESHIDGWTLGQIFIKSY YTIFDKDNLQIGFVRSRQEKGNKKKDDHFKRSFLNVRTKRGSNGNARRRGTYNGPLSA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0623300.fa Sequence name : PcyM_0623300 Sequence length : 478 VALUES OF COMPUTED PARAMETERS Coef20 : 4.572 CoefTot : -0.607 ChDiff : 4 ZoneTo : 42 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 1.876 0.268 0.672 MesoH : -0.865 0.114 -0.492 0.221 MuHd_075 : 27.065 17.693 7.345 7.222 MuHd_095 : 24.640 18.150 7.556 6.003 MuHd_100 : 17.276 13.723 6.673 3.937 MuHd_105 : 11.928 10.193 5.415 3.086 Hmax_075 : 14.500 12.075 3.174 5.600 Hmax_095 : 17.588 11.200 4.896 6.571 Hmax_100 : 14.400 8.600 4.097 7.510 Hmax_105 : 11.200 10.500 4.440 3.580 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2954 0.7046 DFMC : 0.4429 0.5571 This protein is probably imported in mitochondria. f(Ser) = 0.0952 f(Arg) = 0.0476 CMi = 0.69686 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 478 PcyM_0623300 MTPNFVARIGLLCLLNIWLSTFSLPLLKNGGGSRFYIASQGVDKMRRESPHRAHGDLPSERVNQKNNPILIKLIKQDIPS 80 KKMTTYYGQVAVGEKSENVMNVLFDTGSTEFWIPFENCKGDNFPNSHNKYKRTKSFRNKFNKEGLPTLLEVSYLSGKVIG 160 FDGYDTIKLGHNLSVPNTNIAFATKIEIPVLEEFKWDGILGLGFENADSRQRGMKPFLDHLKDENILTEMGYKNQFGYYL 240 SDRGGFISFGGVDNRLKRSPEEEVMWSPVSTEMGFWTIDIVGVRKEYAANVNVKRDEDEVVVKYEGFHDGGNKSIVDTGT 320 FFIYAPKKTMQSYLNELEINSCEDKEKLPYIVFQIKSKGVEGIKGSAIIELVLSPNDYVIEYLNEENWTRECVVGIQADE 400 QKDESHIDGWTLGQIFIKSYYTIFDKDNLQIGFVRSRQEKGNKKKDDHFKRSFLNVRTKRGSNGNARRRGTYNGPLSA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................P.............................................................. 320 ................................................................................ 400 ...........................................................P.................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PcyM_0623300 8 TPNFVAR|IG 0.110 . PcyM_0623300 28 FSLPLLK|NG 0.060 . PcyM_0623300 34 KNGGGSR|FY 0.114 . PcyM_0623300 44 ASQGVDK|MR 0.066 . PcyM_0623300 46 QGVDKMR|RE 0.110 . PcyM_0623300 47 GVDKMRR|ES 0.101 . PcyM_0623300 52 RRESPHR|AH 0.112 . PcyM_0623300 61 GDLPSER|VN 0.082 . PcyM_0623300 65 SERVNQK|NN 0.064 . PcyM_0623300 72 NNPILIK|LI 0.068 . PcyM_0623300 75 ILIKLIK|QD 0.071 . PcyM_0623300 81 KQDIPSK|KM 0.061 . PcyM_0623300 82 QDIPSKK|MT 0.134 . PcyM_0623300 95 QVAVGEK|SE 0.069 . PcyM_0623300 119 IPFENCK|GD 0.060 . PcyM_0623300 129 FPNSHNK|YK 0.077 . PcyM_0623300 131 NSHNKYK|RT 0.077 . PcyM_0623300 132 SHNKYKR|TK 0.203 . PcyM_0623300 134 NKYKRTK|SF 0.096 . PcyM_0623300 137 KRTKSFR|NK 0.138 . PcyM_0623300 139 TKSFRNK|FN 0.129 . PcyM_0623300 142 FRNKFNK|EG 0.072 . PcyM_0623300 157 VSYLSGK|VI 0.066 . PcyM_0623300 168 DGYDTIK|LG 0.055 . PcyM_0623300 185 NIAFATK|IE 0.070 . PcyM_0623300 195 PVLEEFK|WD 0.064 . PcyM_0623300 210 FENADSR|QR 0.090 . PcyM_0623300 212 NADSRQR|GM 0.086 . PcyM_0623300 215 SRQRGMK|PF 0.199 . PcyM_0623300 222 PFLDHLK|DE 0.065 . PcyM_0623300 233 LTEMGYK|NQ 0.056 . PcyM_0623300 243 GYYLSDR|GG 0.099 . PcyM_0623300 255 FGGVDNR|LK 0.076 . PcyM_0623300 257 GVDNRLK|RS 0.059 . PcyM_0623300 258 VDNRLKR|SP 0.780 *ProP* PcyM_0623300 284 IDIVGVR|KE 0.077 . PcyM_0623300 285 DIVGVRK|EY 0.079 . PcyM_0623300 294 AANVNVK|RD 0.075 . PcyM_0623300 295 ANVNVKR|DE 0.254 . PcyM_0623300 303 EDEVVVK|YE 0.069 . PcyM_0623300 313 FHDGGNK|SI 0.078 . PcyM_0623300 327 FFIYAPK|KT 0.064 . PcyM_0623300 328 FIYAPKK|TM 0.093 . PcyM_0623300 345 INSCEDK|EK 0.067 . PcyM_0623300 347 SCEDKEK|LP 0.067 . PcyM_0623300 356 YIVFQIK|SK 0.088 . PcyM_0623300 358 VFQIKSK|GV 0.101 . PcyM_0623300 364 KGVEGIK|GS 0.062 . PcyM_0623300 390 NEENWTR|EC 0.081 . PcyM_0623300 402 IQADEQK|DE 0.086 . PcyM_0623300 418 LGQIFIK|SY 0.093 . PcyM_0623300 426 YYTIFDK|DN 0.066 . PcyM_0623300 435 LQIGFVR|SR 0.111 . PcyM_0623300 437 IGFVRSR|QE 0.072 . PcyM_0623300 440 VRSRQEK|GN 0.274 . PcyM_0623300 443 RQEKGNK|KK 0.066 . PcyM_0623300 444 QEKGNKK|KD 0.088 . PcyM_0623300 445 EKGNKKK|DD 0.168 . PcyM_0623300 450 KKDDHFK|RS 0.068 . PcyM_0623300 451 KDDHFKR|SF 0.333 . PcyM_0623300 457 RSFLNVR|TK 0.082 . PcyM_0623300 459 FLNVRTK|RG 0.068 . PcyM_0623300 460 LNVRTKR|GS 0.590 *ProP* PcyM_0623300 467 GSNGNAR|RR 0.106 . PcyM_0623300 468 SNGNARR|RG 0.129 . PcyM_0623300 469 NGNARRR|GT 0.194 . ____________________________^_________________

  • Fasta :-

    >PcyM_0623300 ATGACGCCCAACTTCGTTGCGCGAATTGGCCTCCTGTGCCTCCTGAACATATGGTTAAGT ACATTTTCGTTGCCCCTTTTAAAAAATGGAGGGGGGAGCCGTTTCTACATCGCTTCCCAA GGGGTAGACAAAATGCGGAGGGAATCTCCACATCGTGCGCATGGTGATCTTCCCTCAGAA AGGGTCAACCAAAAGAACAACCCCATTTTAATCAAATTGATCAAGCAAGACATACCATCG AAAAAAATGACAACATACTATGGCCAAGTGGCCGTAGGAGAGAAGTCGGAAAATGTGATG AATGTCTTATTCGACACGGGCTCTACCGAGTTTTGGATTCCATTCGAAAATTGTAAAGGA GACAATTTTCCCAATTCTCACAATAAATATAAGCGCACCAAATCATTTAGAAATAAATTT AACAAGGAGGGCCTCCCAACGTTATTGGAGGTTAGCTATCTCAGTGGGAAGGTCATCGGA TTTGATGGCTACGACACCATAAAATTAGGCCATAATTTATCCGTTCCAAACACAAACATT GCTTTTGCTACGAAGATAGAAATACCCGTCTTAGAAGAATTCAAATGGGATGGTATTTTA GGTCTCGGATTTGAGAACGCGGATTCGAGGCAGCGCGGGATGAAGCCCTTCTTGGACCAT TTGAAGGATGAAAATATCTTAACGGAGATGGGCTACAAGAACCAGTTTGGCTATTACCTA TCCGACAGAGGGGGGTTTATCAGCTTCGGAGGGGTGGACAACCGATTGAAGAGATCACCC GAGGAGGAAGTTATGTGGAGCCCCGTTTCGACCGAGATGGGCTTTTGGACAATCGACATC GTGGGAGTGAGAAAGGAATACGCAGCAAACGTGAACGTGAAAAGAGACGAGGACGAGGTT GTCGTGAAGTACGAAGGTTTTCATGATGGAGGGAATAAATCCATTGTTGACACAGGGACG TTCTTTATATATGCCCCGAAGAAAACGATGCAGAGTTACCTAAACGAGTTGGAAATAAAT TCTTGTGAGGATAAAGAGAAGCTCCCTTATATTGTATTTCAAATAAAATCTAAGGGAGTT GAAGGGATAAAAGGTTCGGCTATCATCGAATTGGTTCTGTCGCCAAACGATTACGTCATT GAGTACCTGAATGAGGAAAACTGGACCAGAGAATGCGTCGTAGGGATTCAAGCAGACGAA CAGAAAGATGAAAGTCACATAGACGGATGGACATTGGGACAAATATTTATCAAATCTTAC TATACCATTTTCGACAAAGACAATTTACAAATAGGCTTCGTTAGAAGTAGGCAAGAAAAA GGAAACAAAAAAAAGGATGACCATTTTAAGAGGTCATTTCTCAACGTAAGGACAAAGAGG GGCAGTAATGGTAATGCCCGTCGGAGGGGGACTTACAATGGACCCCTCTCAGCATAA
  • Download Fasta

  • Fasta :-

    MTPNFVARIGLLCLLNIWLSTFSLPLLKNGGGSRFYIASQGVDKMRRESPHRAHGDLPSE RVNQKNNPILIKLIKQDIPSKKMTTYYGQVAVGEKSENVMNVLFDTGSTEFWIPFENCKG DNFPNSHNKYKRTKSFRNKFNKEGLPTLLEVSYLSGKVIGFDGYDTIKLGHNLSVPNTNI AFATKIEIPVLEEFKWDGILGLGFENADSRQRGMKPFLDHLKDENILTEMGYKNQFGYYL SDRGGFISFGGVDNRLKRSPEEEVMWSPVSTEMGFWTIDIVGVRKEYAANVNVKRDEDEV VVKYEGFHDGGNKSIVDTGTFFIYAPKKTMQSYLNELEINSCEDKEKLPYIVFQIKSKGV EGIKGSAIIELVLSPNDYVIEYLNEENWTRECVVGIQADEQKDESHIDGWTLGQIFIKSY YTIFDKDNLQIGFVRSRQEKGNKKKDDHFKRSFLNVRTKRGSNGNARRRGTYNGPLSA

  • title: catalytic residue
  • coordinates: D105,D317
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0623300135 SKRTKSFRNK0.992unspPcyM_0623300135 SKRTKSFRNK0.992unspPcyM_0623300135 SKRTKSFRNK0.992unspPcyM_0623300259 SRLKRSPEEE0.997unspPcyM_0623300270 SWSPVSTEMG0.991unspPcyM_0623300374 SELVLSPNDY0.994unspPcyM_0623300405 SQKDESHIDG0.996unspPcyM_0623300462 STKRGSNGNA0.996unspPcyM_062330049 SMRRESPHRA0.998unspPcyM_062330080 SQDIPSKKMT0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India