PcyM_0711100 | 26S proteasome regulatory subunit RPN8, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0711100OTHER0.9998760.0000470.000077
No Results

  • Fasta :-

    >PcyM_0711100 MENDIFEKSKNELERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HLTNSYALPFEEDIKDINIFFVDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTDQSIFPVNAYVAIEKAISDNKFRKTFIHIPVTIGAFEAED VGVEFLLKELKSVSTSTLATKVGDKLSSLKSLISKLQEIAAYLNDILNGNIEMNIKILYN LQNVFSLLPDTENPELLEAFMVKNNDIMLNVFIGSITRSVIALHNLINNKIENKINAEKK KQLDVSKDSEEDKEKEKEKDKDMDKEREKSKKKN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0711100.fa Sequence name : PcyM_0711100 Sequence length : 334 VALUES OF COMPUTED PARAMETERS Coef20 : 3.409 CoefTot : 0.000 ChDiff : -4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.753 0.147 0.548 MesoH : -0.683 0.434 -0.445 0.261 MuHd_075 : 7.935 6.718 3.203 0.610 MuHd_095 : 39.038 22.628 10.375 8.024 MuHd_100 : 33.901 19.747 9.306 6.785 MuHd_105 : 27.321 15.744 7.809 5.056 Hmax_075 : -9.450 5.017 -3.088 2.077 Hmax_095 : 6.825 10.412 0.158 4.445 Hmax_100 : 4.400 10.000 0.045 4.440 Hmax_105 : -3.100 7.800 -2.011 3.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9568 0.0432 DFMC : 0.9706 0.0294
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 334 PcyM_0711100 MENDIFEKSKNELERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVVHLTNSYALPFEEDIKDINIF 80 FVDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFINEIFYKYHHAPIFLLVNVHTDQSIFPVNAYVAIEKAISDN 160 KFRKTFIHIPVTIGAFEAEDVGVEFLLKELKSVSTSTLATKVGDKLSSLKSLISKLQEIAAYLNDILNGNIEMNIKILYN 240 LQNVFSLLPDTENPELLEAFMVKNNDIMLNVFIGSITRSVIALHNLINNKIENKINAEKKKQLDVSKDSEEDKEKEKEKD 320 KDMDKEREKSKKKN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0711100 8 ENDIFEK|SK 0.080 . PcyM_0711100 10 DIFEKSK|NE 0.059 . PcyM_0711100 15 SKNELER|IY 0.103 . PcyM_0711100 20 ERIYLSK|HV 0.083 . PcyM_0711100 38 VVDHYNR|IA 0.081 . PcyM_0711100 44 RIASNTK|KR 0.055 . PcyM_0711100 45 IASNTKK|RV 0.151 . PcyM_0711100 46 ASNTKKR|VL 0.429 . PcyM_0711100 55 GTILGEK|ID 0.061 . PcyM_0711100 75 PFEEDIK|DI 0.066 . PcyM_0711100 95 NLFNMIR|KI 0.089 . PcyM_0711100 96 LFNMIRK|IN 0.084 . PcyM_0711100 100 IRKINTR|EK 0.105 . PcyM_0711100 102 KINTREK|IV 0.114 . PcyM_0711100 114 TTGSNIK|PN 0.068 . PcyM_0711100 126 INEIFYK|YH 0.072 . PcyM_0711100 155 AYVAIEK|AI 0.068 . PcyM_0711100 161 KAISDNK|FR 0.061 . PcyM_0711100 163 ISDNKFR|KT 0.114 . PcyM_0711100 164 SDNKFRK|TF 0.129 . PcyM_0711100 188 GVEFLLK|EL 0.058 . PcyM_0711100 191 FLLKELK|SV 0.101 . PcyM_0711100 201 TSTLATK|VG 0.057 . PcyM_0711100 205 ATKVGDK|LS 0.054 . PcyM_0711100 210 DKLSSLK|SL 0.077 . PcyM_0711100 215 LKSLISK|LQ 0.065 . PcyM_0711100 236 NIEMNIK|IL 0.061 . PcyM_0711100 263 LEAFMVK|NN 0.076 . PcyM_0711100 278 FIGSITR|SV 0.151 . PcyM_0711100 290 HNLINNK|IE 0.060 . PcyM_0711100 294 NNKIENK|IN 0.062 . PcyM_0711100 299 NKINAEK|KK 0.055 . PcyM_0711100 300 KINAEKK|KQ 0.107 . PcyM_0711100 301 INAEKKK|QL 0.193 . PcyM_0711100 307 KQLDVSK|DS 0.070 . PcyM_0711100 313 KDSEEDK|EK 0.076 . PcyM_0711100 315 SEEDKEK|EK 0.071 . PcyM_0711100 317 EDKEKEK|EK 0.066 . PcyM_0711100 319 KEKEKEK|DK 0.077 . PcyM_0711100 321 KEKEKDK|DM 0.084 . PcyM_0711100 325 KDKDMDK|ER 0.060 . PcyM_0711100 327 KDMDKER|EK 0.122 . PcyM_0711100 329 MDKEREK|SK 0.079 . PcyM_0711100 331 KEREKSK|KK 0.069 . PcyM_0711100 332 EREKSKK|KN 0.136 . PcyM_0711100 333 REKSKKK|N- 0.104 . ____________________________^_________________

  • Fasta :-

    >PcyM_0711100 ATGGAAAATGACATTTTCGAGAAGAGCAAAAATGAATTAGAAAGAATCTACCTGAGCAAA CATGTCGTAGTTCACCCGATAGTCCTCCTCTCAGTGGTGGACCATTACAACCGAATAGCC AGTAACACAAAAAAGAGAGTGCTTGGGACAATCCTTGGAGAAAAAATAGATGGTGTTGTA CATCTCACAAACAGTTACGCATTGCCATTTGAAGAGGACATAAAAGATATCAATATTTTC TTTGTAGATGATAATTACAACGAAAATCTTTTCAATATGATACGAAAAATTAACACTCGA GAGAAAATAGTTGGCTGGTACACTACTGGGTCTAACATTAAACCGAATGATATTTTCATT AATGAAATTTTTTACAAGTACCACCATGCCCCCATCTTCCTTTTGGTCAATGTACACACA GATCAGAGTATCTTTCCCGTGAATGCCTACGTGGCCATTGAGAAGGCCATCTCTGACAAT AAGTTCCGGAAGACATTCATCCACATCCCCGTGACGATAGGCGCGTTCGAAGCCGAGGAC GTTGGAGTGGAGTTCCTGCTGAAAGAGCTGAAGAGCGTGTCGACGTCCACCCTGGCGACC AAAGTGGGTGATAAACTATCCTCCCTAAAAAGCCTCATCTCCAAGCTCCAAGAAATCGCT GCCTACCTAAATGACATTCTCAATGGAAACATAGAAATGAATATTAAAATTCTGTATAAT CTCCAAAACGTATTTAGTCTCCTCCCAGACACAGAGAACCCAGAACTACTGGAAGCCTTT ATGGTAAAAAATAATGACATCATGTTGAATGTCTTTATTGGAAGCATTACCAGGTCGGTT ATTGCTCTGCATAATTTGATTAACAACAAAATTGAAAATAAAATAAACGCTGAGAAGAAG AAGCAGCTCGATGTGTCCAAGGACTCGGAGGAGGACAAAGAAAAGGAAAAAGAAAAAGAC AAAGATATGGATAAAGAGAGGGAAAAATCGAAGAAAAAGAACTAG
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  • Fasta :-

    MENDIFEKSKNELERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HLTNSYALPFEEDIKDINIFFVDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTDQSIFPVNAYVAIEKAISDNKFRKTFIHIPVTIGAFEAED VGVEFLLKELKSVSTSTLATKVGDKLSSLKSLISKLQEIAAYLNDILNGNIEMNIKILYN LQNVFSLLPDTENPELLEAFMVKNNDIMLNVFIGSITRSVIALHNLINNKIENKINAEKK KQLDVSKDSEEDKEKEKEKDKDMDKEREKSKKKN

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0711100309 SVSKDSEEDK0.998unspPcyM_0711100330 SEREKSKKKN0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India