PcyM_0733000 | proteasome subunit beta type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0733000OTHER0.9996000.0003540.000047
No Results

  • Fasta :-

    >PcyM_0733000 MQVESMKAELMGAPLREDPYDIKTPISDGTTIIGIIYEHGVMLACDTRTSSGTLVSNKCS RKINRINENIYACRSGASAHSQKVIELIKHFCLSMKCENRKKGRFHEDEVITDDFANEED IDLSAINNPFGLAQNEDPNYVTKHKYFYEDKFMDFNPLVENVAHMTKKLLYANNNFLSCG LILGGYDKEKKQQLYSVNLNGSIVQRFDYAVSGSGSVYIQSYLQDKYKKNMSKKECFELI LGCVKYAMYNDNSSGGIVRIVNMTKLFVEEFTVTNTHLHFDY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0733000.fa Sequence name : PcyM_0733000 Sequence length : 282 VALUES OF COMPUTED PARAMETERS Coef20 : 3.225 CoefTot : -0.155 ChDiff : -3 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 1.271 0.161 0.577 MesoH : -1.017 0.011 -0.433 0.102 MuHd_075 : 24.802 11.194 5.737 3.222 MuHd_095 : 7.936 8.848 2.308 2.608 MuHd_100 : 5.133 5.471 1.434 2.229 MuHd_105 : 6.213 1.788 1.695 1.490 Hmax_075 : 19.133 14.583 1.791 4.597 Hmax_095 : -2.800 5.775 -3.072 2.013 Hmax_100 : 4.600 4.700 -1.239 2.560 Hmax_105 : -2.900 5.017 -3.189 1.423 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9860 0.0140 DFMC : 0.9739 0.0261
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 282 PcyM_0733000 MQVESMKAELMGAPLREDPYDIKTPISDGTTIIGIIYEHGVMLACDTRTSSGTLVSNKCSRKINRINENIYACRSGASAH 80 SQKVIELIKHFCLSMKCENRKKGRFHEDEVITDDFANEEDIDLSAINNPFGLAQNEDPNYVTKHKYFYEDKFMDFNPLVE 160 NVAHMTKKLLYANNNFLSCGLILGGYDKEKKQQLYSVNLNGSIVQRFDYAVSGSGSVYIQSYLQDKYKKNMSKKECFELI 240 LGCVKYAMYNDNSSGGIVRIVNMTKLFVEEFTVTNTHLHFDY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0733000 7 MQVESMK|AE 0.061 . PcyM_0733000 16 LMGAPLR|ED 0.074 . PcyM_0733000 23 EDPYDIK|TP 0.058 . PcyM_0733000 48 MLACDTR|TS 0.095 . PcyM_0733000 58 GTLVSNK|CS 0.065 . PcyM_0733000 61 VSNKCSR|KI 0.108 . PcyM_0733000 62 SNKCSRK|IN 0.104 . PcyM_0733000 65 CSRKINR|IN 0.115 . PcyM_0733000 74 ENIYACR|SG 0.107 . PcyM_0733000 83 ASAHSQK|VI 0.076 . PcyM_0733000 89 KVIELIK|HF 0.060 . PcyM_0733000 96 HFCLSMK|CE 0.063 . PcyM_0733000 100 SMKCENR|KK 0.096 . PcyM_0733000 101 MKCENRK|KG 0.083 . PcyM_0733000 102 KCENRKK|GR 0.097 . PcyM_0733000 104 ENRKKGR|FH 0.181 . PcyM_0733000 143 DPNYVTK|HK 0.080 . PcyM_0733000 145 NYVTKHK|YF 0.068 . PcyM_0733000 151 KYFYEDK|FM 0.062 . PcyM_0733000 167 NVAHMTK|KL 0.061 . PcyM_0733000 168 VAHMTKK|LL 0.118 . PcyM_0733000 188 ILGGYDK|EK 0.066 . PcyM_0733000 190 GGYDKEK|KQ 0.059 . PcyM_0733000 191 GYDKEKK|QQ 0.076 . PcyM_0733000 206 NGSIVQR|FD 0.131 . PcyM_0733000 226 QSYLQDK|YK 0.064 . PcyM_0733000 228 YLQDKYK|KN 0.071 . PcyM_0733000 229 LQDKYKK|NM 0.130 . PcyM_0733000 233 YKKNMSK|KE 0.062 . PcyM_0733000 234 KKNMSKK|EC 0.136 . PcyM_0733000 245 LILGCVK|YA 0.063 . PcyM_0733000 259 SSGGIVR|IV 0.103 . PcyM_0733000 265 RIVNMTK|LF 0.063 . ____________________________^_________________

  • Fasta :-

    >PcyM_0733000 ATGCAAGTCGAAAGTATGAAGGCCGAATTGATGGGAGCCCCGCTGAGGGAAGACCCGTAC GACATCAAGACGCCCATTTCAGACGGCACGACCATCATAGGAATCATTTATGAGCATGGA GTCATGCTGGCGTGTGACACCAGGACGTCCTCCGGAACACTCGTCAGCAACAAGTGCTCC AGAAAGATAAACAGGATTAACGAAAATATTTATGCCTGTCGTAGTGGAGCTTCTGCACAC AGTCAGAAGGTAATCGAACTCATTAAGCATTTTTGCTTATCGATGAAGTGTGAAAATAGA AAGAAAGGAAGGTTTCACGAGGACGAAGTCATCACGGATGACTTTGCGAATGAGGAAGAC ATCGACCTCAGTGCAATTAACAACCCATTCGGTTTAGCACAGAACGAGGATCCCAATTAT GTTACAAAGCATAAATACTTTTACGAAGATAAATTTATGGACTTCAATCCGTTAGTTGAA AATGTTGCACACATGACGAAGAAGCTACTGTATGCGAACAACAATTTTCTTTCTTGTGGC CTTATCCTGGGAGGATACGATAAAGAAAAGAAGCAGCAACTGTATTCGGTTAACCTAAAC GGAAGCATCGTCCAACGGTTCGACTACGCCGTTAGCGGTAGTGGCAGTGTGTACATACAG TCCTACCTGCAGGACAAGTACAAGAAAAATATGAGCAAAAAGGAGTGCTTTGAATTAATC CTGGGCTGCGTCAAGTACGCCATGTACAACGACAACAGTAGTGGGGGCATCGTGCGGATC GTCAACATGACCAAGCTCTTCGTGGAGGAGTTCACCGTCACGAACACGCATCTGCACTTT GATTACTAG
  • Download Fasta

  • Fasta :-

    MQVESMKAELMGAPLREDPYDIKTPISDGTTIIGIIYEHGVMLACDTRTSSGTLVSNKCS RKINRINENIYACRSGASAHSQKVIELIKHFCLSMKCENRKKGRFHEDEVITDDFANEED IDLSAINNPFGLAQNEDPNYVTKHKYFYEDKFMDFNPLVENVAHMTKKLLYANNNFLSCG LILGGYDKEKKQQLYSVNLNGSIVQRFDYAVSGSGSVYIQSYLQDKYKKNMSKKECFELI LGCVKYAMYNDNSSGGIVRIVNMTKLFVEEFTVTNTHLHFDY

  • title: active site
  • coordinates: T30,D46,R48,K62
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_073300081 SASAHSQKVI0.995unspPcyM_0733000232 SKKNMSKKEC0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India