PcyM_0808000 | 26S protease regulatory subunit 4, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0808000OTHER0.9999840.0000020.000013
No Results

  • Fasta :-

    >PcyM_0808000 MGNTQGGMNNNPYGFLGKKDDKDKGKDREKKKLESAPPSHIGKRKKKKKGVTGHSKLPTV TPNTKCRLKLLKLERIKDYLLLEEEFITNQEQIKTTEDKNYVKLKIDDLRGSPMSVGTLE ELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSV MKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTK RYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQL PNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMK ITQVDLRKARDKALYQKKGNIPEGLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0808000.fa Sequence name : PcyM_0808000 Sequence length : 447 VALUES OF COMPUTED PARAMETERS Coef20 : 2.412 CoefTot : -2.455 ChDiff : 1 ZoneTo : 19 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.671 1.453 -0.008 0.502 MesoH : -0.728 0.408 -0.388 0.253 MuHd_075 : 20.949 11.831 7.303 5.015 MuHd_095 : 19.637 13.693 4.568 3.000 MuHd_100 : 15.418 11.601 3.369 2.627 MuHd_105 : 5.781 5.993 2.475 1.289 Hmax_075 : 5.483 2.217 -0.534 3.453 Hmax_095 : 10.200 4.600 -1.026 2.870 Hmax_100 : 10.200 4.600 -1.026 2.800 Hmax_105 : 2.400 -0.500 -3.722 1.937 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9919 0.0081 DFMC : 0.9881 0.0119
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 447 PcyM_0808000 MGNTQGGMNNNPYGFLGKKDDKDKGKDREKKKLESAPPSHIGKRKKKKKGVTGHSKLPTVTPNTKCRLKLLKLERIKDYL 80 LLEEEFITNQEQIKTTEDKNYVKLKIDDLRGSPMSVGTLEELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLN 160 NKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT 240 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELL 320 NQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGA 400 DIKAICTEAGLLALRERRMKITQVDLRKARDKALYQKKGNIPEGLYL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0808000 18 PYGFLGK|KD 0.058 . PcyM_0808000 19 YGFLGKK|DD 0.102 . PcyM_0808000 22 LGKKDDK|DK 0.076 . PcyM_0808000 24 KKDDKDK|GK 0.072 . PcyM_0808000 26 DDKDKGK|DR 0.082 . PcyM_0808000 28 KDKGKDR|EK 0.116 . PcyM_0808000 30 KGKDREK|KK 0.056 . PcyM_0808000 31 GKDREKK|KL 0.413 . PcyM_0808000 32 KDREKKK|LE 0.121 . PcyM_0808000 43 PPSHIGK|RK 0.072 . PcyM_0808000 44 PSHIGKR|KK 0.254 . PcyM_0808000 45 SHIGKRK|KK 0.126 . PcyM_0808000 46 HIGKRKK|KK 0.138 . PcyM_0808000 47 IGKRKKK|KK 0.470 . PcyM_0808000 48 GKRKKKK|KG 0.146 . PcyM_0808000 49 KRKKKKK|GV 0.320 . PcyM_0808000 56 GVTGHSK|LP 0.061 . PcyM_0808000 65 TVTPNTK|CR 0.056 . PcyM_0808000 67 TPNTKCR|LK 0.110 . PcyM_0808000 69 NTKCRLK|LL 0.054 . PcyM_0808000 72 CRLKLLK|LE 0.058 . PcyM_0808000 75 KLLKLER|IK 0.080 . PcyM_0808000 77 LKLERIK|DY 0.063 . PcyM_0808000 94 TNQEQIK|TT 0.078 . PcyM_0808000 99 IKTTEDK|NY 0.058 . PcyM_0808000 103 EDKNYVK|LK 0.063 . PcyM_0808000 105 KNYVKLK|ID 0.071 . PcyM_0808000 110 LKIDDLR|GS 0.097 . PcyM_0808000 148 ILSFVDK|DL 0.094 . PcyM_0808000 162 SVLLNNK|TN 0.058 . PcyM_0808000 182 PLVSVMK|VE 0.060 . PcyM_0808000 185 SVMKVEK|AP 0.060 . PcyM_0808000 205 SQIQEIK|EA 0.063 . PcyM_0808000 224 YEDIGIK|PP 0.057 . PcyM_0808000 227 IGIKPPK|GV 0.097 . PcyM_0808000 239 GPPGTGK|TL 0.061 . PcyM_0808000 244 GKTLLAK|AV 0.077 . PcyM_0808000 256 TSATFLR|VV 0.199 . PcyM_0808000 265 GSELIQK|YL 0.086 . PcyM_0808000 272 YLGDGPK|LV 0.074 . PcyM_0808000 275 DGPKLVR|EM 0.078 . PcyM_0808000 279 LVREMFK|VA 0.088 . PcyM_0808000 300 IDAVGTK|RY 0.061 . PcyM_0808000 301 DAVGTKR|YE 0.162 . PcyM_0808000 310 ATSGGER|EI 0.079 . PcyM_0808000 314 GEREIQR|TM 0.087 . PcyM_0808000 329 LDGFDSR|GD 0.100 . PcyM_0808000 333 DSRGDVK|VI 0.062 . PcyM_0808000 340 VIMATNR|ID 0.079 . PcyM_0808000 350 LDPALIR|PG 0.073 . PcyM_0808000 353 ALIRPGR|ID 0.232 . PcyM_0808000 356 RPGRIDR|KI 0.193 . PcyM_0808000 357 PGRIDRK|IQ 0.077 . PcyM_0808000 366 LPNPDTK|TK 0.073 . PcyM_0808000 368 NPDTKTK|RR 0.069 . PcyM_0808000 369 PDTKTKR|RI 0.226 . PcyM_0808000 370 DTKTKRR|IF 0.136 . PcyM_0808000 378 FQIHTSK|MT 0.061 . PcyM_0808000 394 EEFVMSK|DE 0.060 . PcyM_0808000 403 LSGADIK|AI 0.069 . PcyM_0808000 415 AGLLALR|ER 0.068 . PcyM_0808000 417 LLALRER|RM 0.080 . PcyM_0808000 418 LALRERR|MK 0.429 . PcyM_0808000 420 LRERRMK|IT 0.134 . PcyM_0808000 427 ITQVDLR|KA 0.098 . PcyM_0808000 428 TQVDLRK|AR 0.099 . PcyM_0808000 430 VDLRKAR|DK 0.285 . PcyM_0808000 432 LRKARDK|AL 0.086 . PcyM_0808000 437 DKALYQK|KG 0.060 . PcyM_0808000 438 KALYQKK|GN 0.119 . ____________________________^_________________

  • Fasta :-

    >PcyM_0808000 ATGGGAAACACGCAAGGTGGAATGAACAACAACCCCTACGGATTTTTAGGCAAAAAAGAT GATAAGGATAAGGGAAAAGACAGGGAAAAGAAAAAGCTAGAAAGCGCACCCCCCTCACAT ATAGGGAAAAGAAAGAAAAAAAAAAAAGGAGTCACCGGACATTCCAAATTACCGACGGTT ACCCCCAATACGAAATGCAGATTAAAACTTCTAAAGTTGGAACGAATAAAAGATTACCTA CTGTTGGAAGAAGAATTTATTACAAACCAAGAGCAGATAAAAACGACAGAAGATAAAAAT TATGTGAAACTAAAAATTGATGATTTGAGAGGTTCGCCAATGAGTGTTGGAACGCTGGAA GAATTGATTGACGAAAATCATGGAATTATTGCCACGTCAGTAGGACCAGAGTATTATGTA AATATACTATCGTTTGTTGATAAGGATTTATTGGAGCCAGGATGTTCAGTTCTGCTAAAT AACAAAACGAACAGCGTCGTTGGGATATTGTTGGATGAAGTGGACCCATTAGTTTCTGTT ATGAAAGTGGAGAAAGCTCCCCTAGAATCCTATGCCGACATTGGTGGCCTAGAATCACAA ATCCAAGAAATTAAAGAAGCAGTAGAATTGCCATTAACCCATCCTGAGTTGTATGAAGAT ATTGGTATTAAACCACCAAAGGGAGTTATATTGTATGGCCCCCCAGGCACCGGAAAAACT CTCTTAGCCAAAGCTGTGGCCAACGAAACATCGGCAACTTTCCTAAGGGTTGTAGGTTCA GAATTAATACAGAAATATTTAGGAGATGGACCTAAGCTAGTTAGAGAAATGTTTAAGGTG GCAGAAGATCATGCACCTTCCATCGTTTTTATTGACGAAATTGATGCTGTCGGTACGAAG AGATATGAAGCGACTAGTGGAGGGGAGAGAGAAATTCAAAGAACCATGTTAGAACTACTA AACCAGTTAGATGGTTTTGATTCGAGGGGAGATGTTAAGGTCATTATGGCAACTAACCGA ATTGATTCACTAGACCCGGCTTTAATTCGACCAGGAAGAATAGACAGAAAAATACAGCTA CCAAATCCGGACACAAAAACGAAGAGAAGAATTTTCCAAATCCATACAAGCAAAATGACT ATGTCCCCAGATGTCGATTTGGAAGAATTTGTTATGTCCAAGGATGAGTTATCCGGTGCA GATATTAAGGCCATATGTACCGAGGCAGGGTTGTTGGCTCTGCGCGAAAGAAGAATGAAA ATTACGCAGGTGGACTTGCGTAAGGCAAGAGATAAAGCACTATACCAGAAAAAGGGCAAC ATCCCCGAGGGGTTGTACTTGTAA
  • Download Fasta

  • Fasta :-

    MGNTQGGMNNNPYGFLGKKDDKDKGKDREKKKLESAPPSHIGKRKKKKKGVTGHSKLPTV TPNTKCRLKLLKLERIKDYLLLEEEFITNQEQIKTTEDKNYVKLKIDDLRGSPMSVGTLE ELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSV MKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTK RYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQL PNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMK ITQVDLRKARDKALYQKKGNIPEGLYL

    No Results
  • title: ATP binding site
  • coordinates: P234,P235,G236,T237,G238,K239,T240,L241,D292,N339
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0808000306 SYEATSGGER0.996unspPcyM_0808000398 SKDELSGADI0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India