PcyM_0811700 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0811700OTHER0.9999360.0000310.000033
No Results

  • Fasta :-

    >PcyM_0811700 MAERGGCLMSEIDNLINDVEDEGENYDELQFCVAPVRIPRNFIKDTKTKNNKLFDFHKGT TTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGK IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDSAYDYNLNLEQAVELARNAIYHATFRDGGSGGKVRVFYIHK NGYDKIIEGQDVYELHYHYTNPAQNDQHVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0811700.fa Sequence name : PcyM_0811700 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.400 CoefTot : 0.141 ChDiff : -7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.071 0.164 0.470 MesoH : -0.492 0.273 -0.295 0.220 MuHd_075 : 36.311 18.267 9.401 6.737 MuHd_095 : 28.670 21.761 6.978 5.561 MuHd_100 : 39.261 26.422 9.452 8.151 MuHd_105 : 38.697 25.719 9.578 8.877 Hmax_075 : 7.467 10.100 0.208 3.290 Hmax_095 : 4.500 13.600 0.735 3.620 Hmax_100 : 19.600 20.000 3.620 6.760 Hmax_105 : 18.100 19.900 3.751 6.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7050 0.2950 DFMC : 0.8174 0.1826
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PcyM_0811700 MAERGGCLMSEIDNLINDVEDEGENYDELQFCVAPVRIPRNFIKDTKTKNNKLFDFHKGTTTLAFKFKDGIIVAVDSRAS 80 MGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGKIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIIL 160 SGYDHTGFNMFYIDDEGKKVEGNLFSCGSGSTYAYSILDSAYDYNLNLEQAVELARNAIYHATFRDGGSGGKVRVFYIHK 240 NGYDKIIEGQDVYELHYHYTNPAQNDQHVM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0811700 4 ---MAER|GG 0.070 . PcyM_0811700 37 FCVAPVR|IP 0.072 . PcyM_0811700 40 APVRIPR|NF 0.254 . PcyM_0811700 44 IPRNFIK|DT 0.100 . PcyM_0811700 47 NFIKDTK|TK 0.063 . PcyM_0811700 49 IKDTKTK|NN 0.061 . PcyM_0811700 52 TKTKNNK|LF 0.065 . PcyM_0811700 58 KLFDFHK|GT 0.073 . PcyM_0811700 66 TTTLAFK|FK 0.072 . PcyM_0811700 68 TLAFKFK|DG 0.093 . PcyM_0811700 78 IVAVDSR|AS 0.099 . PcyM_0811700 92 SSQNVEK|II 0.079 . PcyM_0811700 98 KIIEINK|NI 0.058 . PcyM_0811700 116 DCLYWEK|YL 0.078 . PcyM_0811700 120 WEKYLGK|II 0.066 . PcyM_0811700 123 YLGKIIK|IY 0.065 . PcyM_0811700 128 IKIYELR|NN 0.087 . PcyM_0811700 132 ELRNNEK|IS 0.063 . PcyM_0811700 136 NEKISVR|AA 0.145 . PcyM_0811700 150 NILYQYK|GY 0.066 . PcyM_0811700 178 YIDDEGK|KV 0.078 . PcyM_0811700 179 IDDEGKK|VE 0.080 . PcyM_0811700 216 QAVELAR|NA 0.083 . PcyM_0811700 225 IYHATFR|DG 0.149 . PcyM_0811700 232 DGGSGGK|VR 0.050 . PcyM_0811700 234 GSGGKVR|VF 0.097 . PcyM_0811700 240 RVFYIHK|NG 0.059 . PcyM_0811700 245 HKNGYDK|II 0.079 . ____________________________^_________________

  • Fasta :-

    >PcyM_0811700 ATGGCAGAAAGGGGAGGGTGCCTGATGAGCGAAATTGACAATTTAATCAATGACGTGGAG GATGAGGGAGAAAATTACGACGAGCTGCAATTCTGTGTAGCCCCAGTAAGAATCCCAAGA AATTTCATAAAAGATACCAAGACAAAAAATAACAAGTTGTTTGATTTTCACAAAGGTACA ACCACATTGGCCTTCAAATTTAAGGATGGAATAATAGTAGCAGTGGACTCAAGAGCTTCT ATGGGCTCCTTCATATCTTCACAGAACGTAGAGAAAATTATCGAAATAAATAAAAACATT TTAGGGACAATGGCAGGAGGAGCAGCAGACTGTTTGTATTGGGAAAAATATTTGGGCAAA ATTATAAAAATTTATGAATTGAGAAATAATGAGAAAATCTCTGTCCGAGCAGCCAGTACC ATTTTGAGTAACATTTTATATCAATATAAGGGGTATGGATTATGCTGTGGAATCATTTTA AGTGGTTATGATCACACCGGTTTCAACATGTTCTACATTGATGATGAGGGGAAGAAGGTG GAGGGCAATTTATTTAGTTGCGGAAGTGGTAGCACTTATGCTTACTCCATTTTGGACTCT GCTTATGATTATAACTTGAATCTCGAGCAAGCCGTGGAACTAGCCAGGAATGCAATTTAT CATGCTACCTTTAGGGATGGAGGATCCGGAGGAAAGGTCCGAGTTTTTTACATACACAAG AATGGCTACGACAAAATTATCGAGGGGCAGGATGTTTACGAGTTACATTATCATTACACG AACCCGGCGCAGAACGATCAGCACGTTATGTAG
  • Download Fasta

  • Fasta :-

    MAERGGCLMSEIDNLINDVEDEGENYDELQFCVAPVRIPRNFIKDTKTKNNKLFDFHKGT TTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGK IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDSAYDYNLNLEQAVELARNAIYHATFRDGGSGGKVRVFYIHK NGYDKIIEGQDVYELHYHYTNPAQNDQHVM

  • title: active site
  • coordinates: T60,D76,R78,K92,S189,D226,S229,G230
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India