PcyM_0827900 | DER1-like protein, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0827900SP0.0754130.6698230.254764CS pos: 23-24. QHA-RV. Pr: 0.9579
No Results

  • Fasta :-

    >PcyM_0827900 MFLLRRLLALLCVIIVSVRHQHARVCSNKFAANVLNSGARVAEPPRRTTALKRDTTRKNG PFNRDKKQNATSQHGYYFTKEKNKIVKKKKKFSLNYSRTPKTAAGGRRTKARTHYPLLFI SPSSTSLNEITESVKALFNLDYIENSYLYSYIKSFKRTPPLTKIYLLCTLFLSICMHANK NIYKLIVFDFGKIFYEGQAWRLITPYFYIGNLYLQYFLMFNYLHIYMSSVEIAHYKNPED LLTFLTFGYLSNLLFTIIGSMYNENVLNLQWYVNKLWRVILLGGGKSTSTKADTDVRIAK EQYNHLGYVFSTYILYYWSRINEGTLINCFELFLIKAEYVPFFFIIQNVLLYNEFSLFEV ASILSSYFFFTYEKNLQLNFVRRFNLALLKALRVYPMYEAYREEYE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0827900.fa Sequence name : PcyM_0827900 Sequence length : 406 VALUES OF COMPUTED PARAMETERS Coef20 : 5.336 CoefTot : 1.313 ChDiff : 26 ZoneTo : 42 KR : 6 DE : 0 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.824 2.453 0.301 0.678 MesoH : 0.228 0.768 -0.215 0.416 MuHd_075 : 40.614 20.600 10.794 7.836 MuHd_095 : 39.512 20.503 11.567 8.074 MuHd_100 : 33.170 22.585 8.952 8.237 MuHd_105 : 33.983 19.615 7.244 8.502 Hmax_075 : 6.000 22.517 0.634 2.847 Hmax_095 : 13.912 13.737 3.983 4.865 Hmax_100 : 13.700 28.400 3.597 8.300 Hmax_105 : 20.067 28.700 5.287 8.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0666 0.9334 DFMC : 0.0706 0.9294 This protein is probably imported in mitochondria. f(Ser) = 0.0714 f(Arg) = 0.1190 CMi = 0.30181 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 406 PcyM_0827900 MFLLRRLLALLCVIIVSVRHQHARVCSNKFAANVLNSGARVAEPPRRTTALKRDTTRKNGPFNRDKKQNATSQHGYYFTK 80 EKNKIVKKKKKFSLNYSRTPKTAAGGRRTKARTHYPLLFISPSSTSLNEITESVKALFNLDYIENSYLYSYIKSFKRTPP 160 LTKIYLLCTLFLSICMHANKNIYKLIVFDFGKIFYEGQAWRLITPYFYIGNLYLQYFLMFNYLHIYMSSVEIAHYKNPED 240 LLTFLTFGYLSNLLFTIIGSMYNENVLNLQWYVNKLWRVILLGGGKSTSTKADTDVRIAKEQYNHLGYVFSTYILYYWSR 320 INEGTLINCFELFLIKAEYVPFFFIIQNVLLYNEFSLFEVASILSSYFFFTYEKNLQLNFVRRFNLALLKALRVYPMYEA 400 YREEYE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0827900 5 --MFLLR|RL 0.078 . PcyM_0827900 6 -MFLLRR|LL 0.077 . PcyM_0827900 19 VIIVSVR|HQ 0.084 . PcyM_0827900 24 VRHQHAR|VC 0.163 . PcyM_0827900 29 ARVCSNK|FA 0.107 . PcyM_0827900 40 VLNSGAR|VA 0.120 . PcyM_0827900 46 RVAEPPR|RT 0.087 . PcyM_0827900 47 VAEPPRR|TT 0.137 . PcyM_0827900 52 RRTTALK|RD 0.062 . PcyM_0827900 53 RTTALKR|DT 0.241 . PcyM_0827900 57 LKRDTTR|KN 0.113 . PcyM_0827900 58 KRDTTRK|NG 0.074 . PcyM_0827900 64 KNGPFNR|DK 0.159 . PcyM_0827900 66 GPFNRDK|KQ 0.063 . PcyM_0827900 67 PFNRDKK|QN 0.374 . PcyM_0827900 80 HGYYFTK|EK 0.069 . PcyM_0827900 82 YYFTKEK|NK 0.061 . PcyM_0827900 84 FTKEKNK|IV 0.079 . PcyM_0827900 87 EKNKIVK|KK 0.062 . PcyM_0827900 88 KNKIVKK|KK 0.102 . PcyM_0827900 89 NKIVKKK|KK 0.123 . PcyM_0827900 90 KIVKKKK|KF 0.106 . PcyM_0827900 91 IVKKKKK|FS 0.127 . PcyM_0827900 98 FSLNYSR|TP 0.074 . PcyM_0827900 101 NYSRTPK|TA 0.253 . PcyM_0827900 107 KTAAGGR|RT 0.083 . PcyM_0827900 108 TAAGGRR|TK 0.120 . PcyM_0827900 110 AGGRRTK|AR 0.111 . PcyM_0827900 112 GRRTKAR|TH 0.177 . PcyM_0827900 135 EITESVK|AL 0.059 . PcyM_0827900 153 YLYSYIK|SF 0.069 . PcyM_0827900 156 SYIKSFK|RT 0.062 . PcyM_0827900 157 YIKSFKR|TP 0.093 . PcyM_0827900 163 RTPPLTK|IY 0.054 . PcyM_0827900 180 ICMHANK|NI 0.064 . PcyM_0827900 184 ANKNIYK|LI 0.062 . PcyM_0827900 192 IVFDFGK|IF 0.068 . PcyM_0827900 201 YEGQAWR|LI 0.093 . PcyM_0827900 236 VEIAHYK|NP 0.071 . PcyM_0827900 275 LQWYVNK|LW 0.070 . PcyM_0827900 278 YVNKLWR|VI 0.091 . PcyM_0827900 286 ILLGGGK|ST 0.080 . PcyM_0827900 291 GKSTSTK|AD 0.089 . PcyM_0827900 297 KADTDVR|IA 0.091 . PcyM_0827900 300 TDVRIAK|EQ 0.145 . PcyM_0827900 320 ILYYWSR|IN 0.098 . PcyM_0827900 336 FELFLIK|AE 0.053 . PcyM_0827900 374 FFFTYEK|NL 0.051 . PcyM_0827900 382 LQLNFVR|RF 0.075 . PcyM_0827900 383 QLNFVRR|FN 0.211 . PcyM_0827900 390 FNLALLK|AL 0.060 . PcyM_0827900 393 ALLKALR|VY 0.069 . PcyM_0827900 402 PMYEAYR|EE 0.076 . ____________________________^_________________

  • Fasta :-

    >PcyM_0827900 ATGTTTTTGCTGCGCAGGTTACTCGCCCTTTTATGCGTAATAATCGTAAGTGTGAGGCAC CAGCACGCGAGGGTTTGCTCGAACAAGTTTGCGGCGAACGTGCTGAACAGCGGCGCGCGT GTAGCGGAGCCACCCCGGAGAACGACGGCCCTGAAGAGGGACACGACAAGGAAAAATGGC CCCTTCAACAGGGACAAGAAGCAAAACGCGACATCACAACATGGGTACTACTTTACTAAG GAGAAAAACAAAATAGTAAAAAAAAAAAAAAAATTTTCACTGAATTATTCTAGAACCCCT AAAACAGCAGCAGGGGGGAGAAGAACAAAGGCAAGGACTCACTACCCCCTCCTTTTTATA TCCCCCTCGTCAACATCATTAAACGAGATTACTGAAAGTGTGAAGGCTCTGTTCAACTTA GACTACATAGAAAATAGCTATCTCTATTCCTACATCAAATCGTTTAAAAGGACCCCCCCC TTAACCAAAATTTACCTCCTGTGTACCTTGTTCTTGAGCATATGCATGCATGCAAATAAA AATATATACAAATTAATCGTGTTCGATTTTGGCAAAATATTCTACGAGGGTCAAGCGTGG AGACTAATTACTCCCTACTTTTATATAGGCAATTTGTACTTGCAATATTTTCTCATGTTT AACTATCTACACATCTATATGTCCTCGGTCGAAATTGCACACTACAAAAACCCGGAGGAC TTGCTAACATTCCTGACCTTTGGTTATCTGTCTAACCTTCTTTTTACAATAATTGGAAGT ATGTACAATGAAAACGTATTGAACCTTCAATGGTATGTGAATAAACTTTGGAGAGTTATT TTATTAGGAGGGGGAAAGAGTACTTCCACCAAGGCGGACACAGACGTACGTATAGCAAAA GAGCAGTATAACCACCTCGGTTATGTTTTCTCCACGTACATACTCTACTACTGGAGTCGG ATCAACGAAGGCACTCTGATTAACTGCTTCGAGCTCTTCCTCATCAAGGCTGAGTATGTC CCTTTTTTTTTTATCATACAGAATGTTTTACTATACAATGAATTTTCTCTCTTCGAAGTT GCATCTATTTTGTCTAGTTATTTTTTCTTCACCTATGAGAAGAATTTGCAGTTGAATTTT GTGCGCCGTTTTAACCTCGCCCTTCTCAAGGCGCTGCGTGTCTACCCTATGTACGAGGCC TACAGGGAAGAGTACGAGTAG
  • Download Fasta

  • Fasta :-

    MFLLRRLLALLCVIIVSVRHQHARVCSNKFAANVLNSGARVAEPPRRTTALKRDTTRKNG PFNRDKKQNATSQHGYYFTKEKNKIVKKKKKFSLNYSRTPKTAAGGRRTKARTHYPLLFI SPSSTSLNEITESVKALFNLDYIENSYLYSYIKSFKRTPPLTKIYLLCTLFLSICMHANK NIYKLIVFDFGKIFYEGQAWRLITPYFYIGNLYLQYFLMFNYLHIYMSSVEIAHYKNPED LLTFLTFGYLSNLLFTIIGSMYNENVLNLQWYVNKLWRVILLGGGKSTSTKADTDVRIAK EQYNHLGYVFSTYILYYWSRINEGTLINCFELFLIKAEYVPFFFIIQNVLLYNEFSLFEV ASILSSYFFFTYEKNLQLNFVRRFNLALLKALRVYPMYEAYREEYE

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IDSitePeptideScoreMethod
PcyM_0827900289 SGKSTSTKAD0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India