PcyM_0836800 | ATP-dependent Clp protease proteolytic subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_0836800SP0.1601070.8247490.015144CS pos: 20-21. THA-KR. Pr: 0.9742
No Results

  • Fasta :-

    >PcyM_0836800 MVCLFSLLLFTLLRNNKTHAKRNTHRLSAAPFIQFPGGGVPQGKARHNWAGRGSDGGCAG RCSGRCSGRCSGVYGRCSKTRGASSNSLPLSIGDEQEGVEPGEESASEGAADGVSRSHPP AKGMKIVKNGELCMDPATGVGGFLVGEGTRLEDPPPKGKQIHKSSRGGSGIISRRSGIIS SSSSRRYRRREGLLPRVDHIKDMKKDVKLFFFKKRIIYLTEEINKKTADEMISQLLYLDN INHDDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKS LPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYNYLSTFTNQTTETIEKDSDRDYY MNALEAKRYGIIDEVIQTKLPHPYFDEAVRESSSGAPSV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0836800.fa Sequence name : PcyM_0836800 Sequence length : 399 VALUES OF COMPUTED PARAMETERS Coef20 : 4.723 CoefTot : -2.639 ChDiff : 15 ZoneTo : 93 KR : 14 DE : 1 CleavSite : 83 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.971 1.829 0.343 0.655 MesoH : -0.520 0.385 -0.364 0.267 MuHd_075 : 37.657 19.800 9.181 7.129 MuHd_095 : 47.971 20.208 11.670 8.954 MuHd_100 : 44.191 19.663 11.959 8.436 MuHd_105 : 41.575 17.289 11.500 7.545 Hmax_075 : 5.950 4.200 3.854 2.345 Hmax_095 : 10.100 5.500 5.901 2.670 Hmax_100 : 10.500 5.500 5.551 2.670 Hmax_105 : 6.100 1.050 3.029 2.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0094 0.9906 DFMC : 0.0033 0.9967 This protein is probably imported in mitochondria. f(Ser) = 0.1183 f(Arg) = 0.1075 CMi = 0.53632 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 399 PcyM_0836800 MVCLFSLLLFTLLRNNKTHAKRNTHRLSAAPFIQFPGGGVPQGKARHNWAGRGSDGGCAGRCSGRCSGRCSGVYGRCSKT 80 RGASSNSLPLSIGDEQEGVEPGEESASEGAADGVSRSHPPAKGMKIVKNGELCMDPATGVGGFLVGEGTRLEDPPPKGKQ 160 IHKSSRGGSGIISRRSGIISSSSSRRYRRREGLLPRVDHIKDMKKDVKLFFFKKRIIYLTEEINKKTADEMISQLLYLDN 240 INHDDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQ 320 DIEIQTKEILYLKKLLYNYLSTFTNQTTETIEKDSDRDYYMNALEAKRYGIIDEVIQTKLPHPYFDEAVRESSSGAPSV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0

  • Fasta :-

    >PcyM_0836800 ATGGTATGTTTATTTTCGCTGCTGCTTTTCACCCTACTGAGAAATAACAAAACGCATGCA AAAAGGAATACACACAGGTTGAGCGCGGCGCCGTTCATACAGTTCCCGGGCGGAGGAGTT CCCCAAGGGAAGGCAAGGCACAACTGGGCAGGCAGGGGAAGCGATGGTGGGTGCGCCGGT AGGTGCAGCGGTAGGTGTAGCGGCAGGTGTAGCGGTGTATACGGCCGCTGCAGCAAGACG AGGGGGGCGTCCTCCAACTCGTTACCGCTCTCGATAGGGGATGAACAGGAAGGTGTCGAA CCGGGGGAGGAGAGCGCATCAGAGGGCGCGGCAGATGGGGTATCCCGAAGTCACCCCCCT GCGAAGGGAATGAAAATTGTTAAGAATGGCGAGTTGTGCATGGATCCTGCCACAGGCGTG GGTGGTTTCCTCGTAGGGGAGGGAACCCGTTTAGAAGACCCCCCCCCCAAAGGAAAACAA ATCCACAAAAGCAGCAGAGGAGGAAGCGGCATAATCAGCAGAAGAAGCGGCATAATCAGC AGCAGTAGCAGCAGGAGGTACAGGAGAAGGGAGGGGCTCCTTCCCCGAGTGGACCACATC AAAGATATGAAGAAGGACGTGAAGTTATTCTTTTTCAAAAAAAGAATAATCTACCTGACG GAGGAAATAAATAAAAAAACGGCCGACGAGATGATCAGCCAGTTGCTCTACTTAGATAAC ATCAACCATGATGATATCAAAATTTATATAAATTCCCCAGGGGGGTCCATAAATGAGGGA CTAGCCATTCTGGACATCTTCAATTACATCAAGTCAGACATACAGACAATATCTTTTGGC CTAGTAGCATCTATGGCATCTGTAATTTTAGCTAGTGGCAAAAAGGGAAAGAGGAAGTCT CTCCCCAACTGTAGAATCATGATCCATCAACCTTTAGGCAATGCATTTGGTCACCCACAG GATATAGAGATACAGACCAAAGAGATACTTTACTTGAAGAAGCTTTTGTATAATTACTTG TCTACTTTTACGAACCAAACAACTGAGACTATTGAGAAAGACTCAGACAGGGATTACTAC ATGAATGCGCTGGAGGCGAAGAGGTACGGAATTATTGATGAGGTGATTCAGACGAAGCTG CCGCACCCATATTTTGACGAGGCTGTGAGGGAATCAAGCAGTGGGGCACCTTCCGTGTAA
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  • Fasta :-

    MVCLFSLLLFTLLRNNKTHAKRNTHRLSAAPFIQFPGGGVPQGKARHNWAGRGSDGGCAG RCSGRCSGRCSGVYGRCSKTRGASSNSLPLSIGDEQEGVEPGEESASEGAADGVSRSHPP AKGMKIVKNGELCMDPATGVGGFLVGEGTRLEDPPPKGKQIHKSSRGGSGIISRRSGIIS SSSSRRYRRREGLLPRVDHIKDMKKDVKLFFFKKRIIYLTEEINKKTADEMISQLLYLDN INHDDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKS LPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYNYLSTFTNQTTETIEKDSDRDYY MNALEAKRYGIIDEVIQTKLPHPYFDEAVRESSSGAPSV

  • title: active site residues
  • coordinates: S284,H309,D358
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_0836800355 SIEKDSDRDY0.998unspPcyM_0836800355 SIEKDSDRDY0.998unspPcyM_0836800355 SIEKDSDRDY0.998unspPcyM_0836800392 SAVRESSSGA0.991unspPcyM_0836800176 SISRRSGIIS0.99unspPcyM_0836800183 SISSSSSRRY0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India