PcyM_0914000 | conserved Plasmodium protein, unknown function

_IDPredictionOTHERSPmTPCS_Position
PcyM_0914000OTHER0.9999380.0000550.000007
No Results

  • Fasta :-

    >PcyM_0914000 MCHYETHAIETERGLINVYFEKQSKLYCLLHTANNILQAHVYSPDDFKDAESMLENAAVG IGTLSGDQGDAAGRGHTDQNSINCYTPDGDGNPSSTQLADVTAKEALNCNNVLTYIKRGF HYFGNFNINILYFFMNKHNIELHWVDNKEIFRKINNSKDSGCVTLFDNNQLNDKKLIAFV VNIVRVNLFDFYHHRHFYAIRKISGMWFQLDSSLSKPVLLPTNEDINNHLMNIVKDNKFH KSDNYIIQVFKKEKNYPK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0914000.fa Sequence name : PcyM_0914000 Sequence length : 258 VALUES OF COMPUTED PARAMETERS Coef20 : 3.468 CoefTot : -0.396 ChDiff : -2 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.606 -0.106 0.546 MesoH : -1.088 0.031 -0.533 0.111 MuHd_075 : 15.281 8.618 4.438 3.231 MuHd_095 : 17.740 8.176 2.220 3.695 MuHd_100 : 21.301 16.127 5.487 5.148 MuHd_105 : 23.109 20.597 7.890 5.690 Hmax_075 : -4.462 5.017 -1.185 2.497 Hmax_095 : 3.200 6.500 -0.914 3.230 Hmax_100 : 7.900 9.500 -0.733 3.680 Hmax_105 : 7.787 10.100 -0.246 3.330 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9885 0.0115 DFMC : 0.9835 0.0165
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 258 PcyM_0914000 MCHYETHAIETERGLINVYFEKQSKLYCLLHTANNILQAHVYSPDDFKDAESMLENAAVGIGTLSGDQGDAAGRGHTDQN 80 SINCYTPDGDGNPSSTQLADVTAKEALNCNNVLTYIKRGFHYFGNFNINILYFFMNKHNIELHWVDNKEIFRKINNSKDS 160 GCVTLFDNNQLNDKKLIAFVVNIVRVNLFDFYHHRHFYAIRKISGMWFQLDSSLSKPVLLPTNEDINNHLMNIVKDNKFH 240 KSDNYIIQVFKKEKNYPK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0914000 13 HAIETER|GL 0.102 . PcyM_0914000 22 INVYFEK|QS 0.057 . PcyM_0914000 25 YFEKQSK|LY 0.054 . PcyM_0914000 48 YSPDDFK|DA 0.084 . PcyM_0914000 74 QGDAAGR|GH 0.086 . PcyM_0914000 104 LADVTAK|EA 0.066 . PcyM_0914000 117 NVLTYIK|RG 0.056 . PcyM_0914000 118 VLTYIKR|GF 0.153 . PcyM_0914000 137 LYFFMNK|HN 0.058 . PcyM_0914000 148 LHWVDNK|EI 0.069 . PcyM_0914000 152 DNKEIFR|KI 0.088 . PcyM_0914000 153 NKEIFRK|IN 0.085 . PcyM_0914000 158 RKINNSK|DS 0.085 . PcyM_0914000 174 NNQLNDK|KL 0.063 . PcyM_0914000 175 NQLNDKK|LI 0.086 . PcyM_0914000 185 FVVNIVR|VN 0.063 . PcyM_0914000 195 FDFYHHR|HF 0.110 . PcyM_0914000 201 RHFYAIR|KI 0.122 . PcyM_0914000 202 HFYAIRK|IS 0.083 . PcyM_0914000 216 LDSSLSK|PV 0.065 . PcyM_0914000 235 HLMNIVK|DN 0.066 . PcyM_0914000 238 NIVKDNK|FH 0.055 . PcyM_0914000 241 KDNKFHK|SD 0.105 . PcyM_0914000 251 YIIQVFK|KE 0.057 . PcyM_0914000 252 IIQVFKK|EK 0.097 . PcyM_0914000 254 QVFKKEK|NY 0.066 . PcyM_0914000 258 KEKNYPK|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >PcyM_0914000 ATGTGCCACTATGAAACACACGCAATTGAAACGGAAAGAGGGTTAATAAATGTGTACTTT GAAAAGCAAAGCAAATTGTATTGCTTGCTTCACACTGCGAACAATATTTTACAGGCACAT GTATATTCCCCCGACGATTTTAAAGACGCCGAAAGTATGCTGGAAAATGCCGCTGTGGGA ATTGGCACGTTAAGCGGTGACCAGGGAGATGCTGCAGGGAGAGGCCACACTGATCAGAAT AGCATAAATTGTTACACCCCCGACGGAGATGGCAACCCTAGCAGTACGCAGCTAGCCGAT GTCACAGCGAAGGAAGCATTAAACTGCAATAACGTCCTCACGTACATTAAAAGAGGCTTC CACTACTTTGGAAATTTCAACATCAACATTTTGTACTTCTTCATGAATAAGCACAACATT GAGCTGCACTGGGTTGACAACAAGGAGATATTTCGCAAAATAAATAACAGCAAAGACAGT GGCTGTGTCACACTCTTCGATAACAACCAGTTAAATGATAAAAAGTTAATCGCATTCGTG GTGAACATCGTTCGGGTTAACCTTTTCGATTTCTACCACCACCGGCATTTTTACGCAATA AGGAAAATTTCAGGGATGTGGTTCCAGCTGGATTCCTCACTGAGTAAACCCGTTTTGTTA CCCACAAATGAAGACATAAATAATCACTTAATGAACATAGTAAAGGATAACAAATTTCAC AAATCTGATAATTACATCATACAAGTTTTTAAGAAGGAGAAGAATTATCCCAAATAA
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  • Fasta :-

    MCHYETHAIETERGLINVYFEKQSKLYCLLHTANNILQAHVYSPDDFKDAESMLENAAVG IGTLSGDQGDAAGRGHTDQNSINCYTPDGDGNPSSTQLADVTAKEALNCNNVLTYIKRGF HYFGNFNINILYFFMNKHNIELHWVDNKEIFRKINNSKDSGCVTLFDNNQLNDKKLIAFV VNIVRVNLFDFYHHRHFYAIRKISGMWFQLDSSLSKPVLLPTNEDINNHLMNIVKDNKFH KSDNYIIQVFKKEKNYPK

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India