PcyM_0916500 | rhomboid protease ROM1, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_0916500OTHER0.9999820.0000000.000018
No Results

  • Fasta :-

    >PcyM_0916500 MSNIHTLAEYRDDYGENLPFNRKFYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSII QIIVFIISVSIKPADFLTPSDSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV FFQLRMGFTLEKNYGIVKVIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGVVTSE LLLLWHIIRHRERVIFNVIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQM ENKPSWYDHMKIVSYSCLALLAIVPPIVLFTVPRTC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0916500.fa Sequence name : PcyM_0916500 Sequence length : 276 VALUES OF COMPUTED PARAMETERS Coef20 : 3.077 CoefTot : 0.002 ChDiff : 6 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.294 2.841 0.486 0.915 MesoH : 0.669 1.120 -0.032 0.459 MuHd_075 : 16.137 7.850 3.758 4.065 MuHd_095 : 18.533 15.247 7.204 2.792 MuHd_100 : 23.358 20.736 8.117 4.508 MuHd_105 : 25.333 20.907 7.612 4.759 Hmax_075 : 1.400 2.100 -3.206 2.193 Hmax_095 : -3.150 5.500 -2.093 1.420 Hmax_100 : 2.400 10.900 0.031 2.840 Hmax_105 : 1.487 10.000 -0.311 2.713 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9936 0.0064 DFMC : 0.9931 0.0069
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 276 PcyM_0916500 MSNIHTLAEYRDDYGENLPFNRKFYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSIIQIIVFIISVSIKPADFLTPS 80 DSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKVIILYFLTGIYGNILSSSVTYC 160 PIKVGASTSGMGLLGVVTSELLLLWHIIRHRERVIFNVIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQM 240 ENKPSWYDHMKIVSYSCLALLAIVPPIVLFTVPRTC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0916500 11 HTLAEYR|DD 0.085 . PcyM_0916500 22 ENLPFNR|KF 0.099 . PcyM_0916500 23 NLPFNRK|FY 0.074 . PcyM_0916500 34 QSSFIQR|SK 0.141 . PcyM_0916500 36 SFIQRSK|PI 0.072 . PcyM_0916500 51 FPHFTWK|SF 0.098 . PcyM_0916500 72 IISVSIK|PA 0.089 . PcyM_0916500 94 GANVASR|IK 0.111 . PcyM_0916500 96 NVASRIK|QG 0.061 . PcyM_0916500 102 KQGEIHR|LI 0.086 . PcyM_0916500 125 NVFFQLR|MG 0.087 . PcyM_0916500 132 MGFTLEK|NY 0.067 . PcyM_0916500 138 KNYGIVK|VI 0.060 . PcyM_0916500 163 VTYCPIK|VG 0.055 . PcyM_0916500 189 LLWHIIR|HR 0.098 . PcyM_0916500 191 WHIIRHR|ER 0.069 . PcyM_0916500 193 IIRHRER|VI 0.116 . PcyM_0916500 243 NSQMENK|PS 0.061 . PcyM_0916500 251 SWYDHMK|IV 0.095 . PcyM_0916500 274 VLFTVPR|TC 0.089 . ____________________________^_________________

  • Fasta :-

    >PcyM_0916500 ATGAGCAACATCCACACCCTAGCCGAGTACAGGGACGACTACGGGGAAAATCTCCCCTTC AACAGAAAGTTCTATCAGTCCCAGAGTAGCTTCATACAAAGATCGAAACCCATTGATGTA GTAAATCTCATATTTCCGCACTTCACCTGGAAGAGTTTTATCATGGCTGTGTCCATAATA CAAATAATTGTTTTTATAATATCAGTTAGTATAAAGCCCGCCGATTTTTTGACTCCTTCT GACTCCCTCCTGATAACGCTAGGAGCGAATGTGGCTTCCAGGATAAAGCAAGGAGAAATT CACAGATTGATTCTGCCCATATTTTTACATGCGAACATATTTCACACATTTTTTAATGTG TTTTTCCAGTTAAGAATGGGATTTACGTTGGAGAAAAATTACGGCATTGTGAAGGTTATT ATTCTTTATTTCTTGACAGGCATATATGGAAACATATTATCCTCCTCTGTTACTTACTGC CCTATCAAAGTTGGTGCAAGCACCTCCGGCATGGGATTACTGGGCGTTGTAACATCTGAA TTATTGCTACTATGGCATATTATTAGACATAGAGAGAGAGTCATTTTTAACGTTATCTTT TTTTCTTTAATTTCTTTTTTTTACTATTTTACATTTAACGGGTCGAATATTGATCATGTT GGTCATTTGGGAGGATTGCTCTCAGGCATATCCATGGGCATACTCTACAACAGCCAAATG GAAAACAAGCCGTCCTGGTACGACCACATGAAAATAGTTTCCTATTCCTGCTTAGCTCTG TTAGCCATCGTCCCTCCGATTGTTTTGTTTACCGTACCGCGCACCTGCTAA
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  • Fasta :-

    MSNIHTLAEYRDDYGENLPFNRKFYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSII QIIVFIISVSIKPADFLTPSDSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV FFQLRMGFTLEKNYGIVKVIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGVVTSE LLLLWHIIRHRERVIFNVIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQM ENKPSWYDHMKIVSYSCLALLAIVPPIVLFTVPRTC

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PcyM_0916500245 SENKPSWYDH0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India