PcyM_0918700 | pyridoxine biosynthesis protein PDX2, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_0918700OTHER0.9994050.0005210.000074
No Results

  • Fasta :-

    >PcyM_0918700 MTDITIGVLSLQGDFQPHIKHFHKLEQPRLRVIEVRNKEELSTCDGLVIPGGESTTLRKC FAYDNDALYNALREFIHVKKKPVWGTCAGCILLSNNVQNNETQSQAYGKKFSLGGLDITI SRNYYGSQNDSFICSLNVHSESSAFKKNLRGACIRAPYIQKIHSDQVHTLATFSHETAGP NIIAAVEQNNCLGMVFHPELMPYSSFHQYFYEKVKNSKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_0918700.fa Sequence name : PcyM_0918700 Sequence length : 219 VALUES OF COMPUTED PARAMETERS Coef20 : 3.336 CoefTot : 0.000 ChDiff : 4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.665 0.753 0.032 0.416 MesoH : -0.680 -0.016 -0.467 0.134 MuHd_075 : 18.418 11.875 4.671 2.289 MuHd_095 : 17.010 10.506 3.625 2.127 MuHd_100 : 19.098 12.411 3.353 2.830 MuHd_105 : 16.584 11.226 1.890 2.901 Hmax_075 : 17.267 13.417 2.281 4.795 Hmax_095 : 11.462 10.200 1.010 3.980 Hmax_100 : 13.600 13.600 0.981 5.520 Hmax_105 : 10.800 8.837 -0.073 4.043 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9221 0.0779 DFMC : 0.9361 0.0639
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 219 PcyM_0918700 MTDITIGVLSLQGDFQPHIKHFHKLEQPRLRVIEVRNKEELSTCDGLVIPGGESTTLRKCFAYDNDALYNALREFIHVKK 80 KPVWGTCAGCILLSNNVQNNETQSQAYGKKFSLGGLDITISRNYYGSQNDSFICSLNVHSESSAFKKNLRGACIRAPYIQ 160 KIHSDQVHTLATFSHETAGPNIIAAVEQNNCLGMVFHPELMPYSSFHQYFYEKVKNSKK 240 ................................................................................ 80 ................................................................................ 160 ........................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_0918700 20 DFQPHIK|HF 0.070 . PcyM_0918700 24 HIKHFHK|LE 0.067 . PcyM_0918700 29 HKLEQPR|LR 0.082 . PcyM_0918700 31 LEQPRLR|VI 0.100 . PcyM_0918700 36 LRVIEVR|NK 0.096 . PcyM_0918700 38 VIEVRNK|EE 0.053 . PcyM_0918700 58 GESTTLR|KC 0.112 . PcyM_0918700 59 ESTTLRK|CF 0.068 . PcyM_0918700 73 ALYNALR|EF 0.082 . PcyM_0918700 79 REFIHVK|KK 0.064 . PcyM_0918700 80 EFIHVKK|KP 0.086 . PcyM_0918700 81 FIHVKKK|PV 0.172 . PcyM_0918700 109 QSQAYGK|KF 0.078 . PcyM_0918700 110 SQAYGKK|FS 0.141 . PcyM_0918700 122 LDITISR|NY 0.085 . PcyM_0918700 146 SESSAFK|KN 0.067 . PcyM_0918700 147 ESSAFKK|NL 0.144 . PcyM_0918700 150 AFKKNLR|GA 0.096 . PcyM_0918700 155 LRGACIR|AP 0.098 . PcyM_0918700 161 RAPYIQK|IH 0.074 . PcyM_0918700 213 HQYFYEK|VK 0.058 . PcyM_0918700 215 YFYEKVK|NS 0.064 . PcyM_0918700 218 EKVKNSK|K- 0.064 . PcyM_0918700 219 KVKNSKK|-- 0.103 . ____________________________^_________________

  • Fasta :-

    >PcyM_0918700 ATGACAGATATCACAATTGGGGTCTTGTCTCTCCAGGGCGACTTCCAGCCCCACATCAAA CATTTCCATAAATTGGAGCAACCACGCTTGAGGGTTATAGAAGTTAGAAATAAAGAGGAG CTGAGCACCTGTGACGGTCTGGTGATACCTGGCGGGGAGTCCACAACATTGAGGAAGTGT TTCGCCTACGATAACGATGCCTTATACAACGCCTTAAGGGAGTTCATCCACGTCAAGAAG AAACCCGTATGGGGGACCTGTGCGGGCTGCATCCTCCTCTCGAACAACGTGCAGAACAAT GAGACGCAGAGCCAAGCATACGGAAAAAAATTTTCCTTGGGAGGCCTGGACATCACCATA AGCCGGAACTATTACGGCTCGCAGAACGACAGCTTCATATGCTCACTGAATGTACACTCA GAAAGCAGTGCCTTCAAGAAGAATTTGCGCGGGGCTTGTATACGAGCCCCTTACATACAG AAAATTCACTCGGACCAGGTTCACACACTCGCGACATTTTCGCACGAAACCGCCGGTCCA AATATAATAGCTGCTGTCGAACAGAACAACTGCTTGGGGATGGTTTTCCACCCAGAGCTA ATGCCGTACAGTTCCTTTCATCAGTATTTTTACGAGAAGGTGAAAAATAGTAAAAAGTGA
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  • Fasta :-

    MTDITIGVLSLQGDFQPHIKHFHKLEQPRLRVIEVRNKEELSTCDGLVIPGGESTTLRKC FAYDNDALYNALREFIHVKKKPVWGTCAGCILLSNNVQNNETQSQAYGKKFSLGGLDITI SRNYYGSQNDSFICSLNVHSESSAFKKNLRGACIRAPYIQKIHSDQVHTLATFSHETAGP NIIAAVEQNNCLGMVFHPELMPYSSFHQYFYEKVKNSKK

  • title: catalytic triad
  • coordinates: C87,H197,E199
No Results
No Results
IDSitePeptideScoreMethod
PcyM_091870042 SKEELSTCDG0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India