PcyM_1004200 | methionine aminopeptidase 1a, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1004200OTHER0.9182290.0008820.080889
No Results

  • Fasta :-

    >PcyM_1004200 MRKFLPALPKRNPNFHTHVLTPKINKIKVPEKSSFKPTLQDGEYKITPMQSVPGHIIRPS YAETGFVKHSNIEYEIKDEESIRKMKEAAKIAAQCLKLCLENSKEGVTTDEIDKMAFDFY IKNGVYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKDGDIITYDCTVYVDGVFGDCAG TTGIGTISKSHQKLIDVSKECLYKAISVCKHGQKFSEIGRIITEHAEKNGFSVIQEFCGH FIGRNMHMYPLIEHHYPNGHPDDECMQVGQIFTIEPILSEGSRKIHTWKDQWTVCTNDNA FCSQWEHTILVQQNGAEILTHCD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1004200.fa Sequence name : PcyM_1004200 Sequence length : 323 VALUES OF COMPUTED PARAMETERS Coef20 : 3.728 CoefTot : -1.933 ChDiff : -2 ZoneTo : 30 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 0.829 0.110 0.445 MesoH : -0.600 0.179 -0.307 0.218 MuHd_075 : 25.747 19.620 5.827 6.701 MuHd_095 : 33.763 22.762 8.928 7.595 MuHd_100 : 26.640 22.489 7.700 6.810 MuHd_105 : 18.625 17.037 6.495 4.631 Hmax_075 : 0.900 18.667 1.721 2.460 Hmax_095 : 8.600 10.700 -1.356 4.520 Hmax_100 : 7.800 10.700 -1.356 4.520 Hmax_105 : 6.400 2.700 0.050 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2943 0.7057 DFMC : 0.4736 0.5264 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.0667 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 323 PcyM_1004200 MRKFLPALPKRNPNFHTHVLTPKINKIKVPEKSSFKPTLQDGEYKITPMQSVPGHIIRPSYAETGFVKHSNIEYEIKDEE 80 SIRKMKEAAKIAAQCLKLCLENSKEGVTTDEIDKMAFDFYIKNGVYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKDG 160 DIITYDCTVYVDGVFGDCAGTTGIGTISKSHQKLIDVSKECLYKAISVCKHGQKFSEIGRIITEHAEKNGFSVIQEFCGH 240 FIGRNMHMYPLIEHHYPNGHPDDECMQVGQIFTIEPILSEGSRKIHTWKDQWTVCTNDNAFCSQWEHTILVQQNGAEILT 320 HCD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1004200 2 -----MR|KF 0.091 . PcyM_1004200 3 ----MRK|FL 0.093 . PcyM_1004200 10 FLPALPK|RN 0.059 . PcyM_1004200 11 LPALPKR|NP 0.161 . PcyM_1004200 23 THVLTPK|IN 0.067 . PcyM_1004200 26 LTPKINK|IK 0.058 . PcyM_1004200 28 PKINKIK|VP 0.064 . PcyM_1004200 32 KIKVPEK|SS 0.082 . PcyM_1004200 36 PEKSSFK|PT 0.061 . PcyM_1004200 45 LQDGEYK|IT 0.059 . PcyM_1004200 58 VPGHIIR|PS 0.106 . PcyM_1004200 68 AETGFVK|HS 0.062 . PcyM_1004200 77 NIEYEIK|DE 0.081 . PcyM_1004200 83 KDEESIR|KM 0.081 . PcyM_1004200 84 DEESIRK|MK 0.086 . PcyM_1004200 86 ESIRKMK|EA 0.203 . PcyM_1004200 90 KMKEAAK|IA 0.075 . PcyM_1004200 97 IAAQCLK|LC 0.057 . PcyM_1004200 104 LCLENSK|EG 0.053 . PcyM_1004200 114 TTDEIDK|MA 0.061 . PcyM_1004200 122 AFDFYIK|NG 0.048 . PcyM_1004200 137 NFHGFPK|TV 0.098 . PcyM_1004200 155 HGIPNLR|KL 0.083 . PcyM_1004200 156 GIPNLRK|LK 0.077 . PcyM_1004200 158 PNLRKLK|DG 0.146 . PcyM_1004200 189 GIGTISK|SH 0.077 . PcyM_1004200 193 ISKSHQK|LI 0.070 . PcyM_1004200 199 KLIDVSK|EC 0.060 . PcyM_1004200 204 SKECLYK|AI 0.079 . PcyM_1004200 210 KAISVCK|HG 0.062 . PcyM_1004200 214 VCKHGQK|FS 0.072 . PcyM_1004200 220 KFSEIGR|II 0.091 . PcyM_1004200 228 ITEHAEK|NG 0.062 . PcyM_1004200 244 CGHFIGR|NM 0.099 . PcyM_1004200 283 ILSEGSR|KI 0.118 . PcyM_1004200 284 LSEGSRK|IH 0.087 . PcyM_1004200 289 RKIHTWK|DQ 0.083 . ____________________________^_________________

  • Fasta :-

    >PcyM_1004200 ATGCGTAAATTTTTACCTGCCTTACCAAAGAGGAATCCCAATTTCCATACCCATGTCTTA ACTCCAAAAATAAACAAAATTAAGGTTCCGGAGAAGAGCTCCTTCAAGCCAACACTCCAG GATGGCGAATACAAAATAACACCGATGCAAAGCGTCCCTGGGCACATCATCCGACCCTCC TACGCTGAAACTGGGTTTGTCAAACATTCAAACATCGAGTACGAAATTAAGGATGAAGAA AGTATTCGTAAAATGAAAGAGGCTGCCAAAATTGCAGCCCAGTGTTTGAAGCTTTGTTTA GAAAATTCAAAGGAAGGGGTAACAACAGATGAAATAGACAAAATGGCCTTCGATTTTTAC ATAAAAAATGGTGTCTACCCGGCTGGCATCAATTTCCACGGTTTTCCCAAAACGGTTTGC GCCTCTCCGAACGAAGTGGTCTGCCACGGAATCCCCAACTTGAGGAAACTAAAAGACGGC GACATCATAACGTACGACTGCACAGTCTATGTCGATGGGGTGTTCGGAGACTGCGCCGGG ACCACAGGCATAGGCACAATCTCGAAAAGTCACCAGAAGTTAATTGATGTCAGCAAAGAA TGCCTTTATAAAGCCATTTCTGTGTGTAAACATGGTCAGAAATTCTCCGAAATTGGACGA ATCATAACTGAGCATGCAGAAAAAAATGGCTTTAGTGTGATACAAGAATTCTGTGGACAT TTCATTGGCCGAAATATGCATATGTACCCTTTGATTGAACACCATTATCCGAATGGCCAT CCTGATGATGAGTGCATGCAAGTGGGACAGATATTCACAATCGAGCCAATCCTATCGGAG GGAAGTAGAAAAATCCATACATGGAAGGATCAGTGGACCGTGTGTACCAATGATAATGCA TTTTGTTCGCAATGGGAACACACCATTTTGGTGCAGCAAAATGGTGCTGAAATATTGACC CACTGTGATTAG
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  • Fasta :-

    MRKFLPALPKRNPNFHTHVLTPKINKIKVPEKSSFKPTLQDGEYKITPMQSVPGHIIRPS YAETGFVKHSNIEYEIKDEESIRKMKEAAKIAAQCLKLCLENSKEGVTTDEIDKMAFDFY IKNGVYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKDGDIITYDCTVYVDGVFGDCAG TTGIGTISKSHQKLIDVSKECLYKAISVCKHGQKFSEIGRIITEHAEKNGFSVIQEFCGH FIGRNMHMYPLIEHHYPNGHPDDECMQVGQIFTIEPILSEGSRKIHTWKDQWTVCTNDNA FCSQWEHTILVQQNGAEILTHCD

  • title: active site
  • coordinates: H149,D166,D177,H240,E275,E306
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India