PcyM_1013700 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1013700OTHER0.9999380.0000520.000010
No Results

  • Fasta :-

    >PcyM_1013700 MEILPLSDHSGEKKPEEREAAVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSL SYSIYTRHCPKISKLTDKCIIGSSGMQSDIKTLHSLLKKKIELFVLEHAHYPDIHVIARL LCVILYSRRFFPYYTFNLLAGVSNENKGVLYNYDAIGSYCEATHSCVGSGSALILPILDN RMEQKNQLIKNLNFNLRDDIDFVKDAITSATERDIYTGDKTEIYIIDHMGVNTTTLELKQ D
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1013700.fa Sequence name : PcyM_1013700 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 2.719 CoefTot : 0.000 ChDiff : -3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.424 1.300 0.242 0.519 MesoH : -0.280 0.495 -0.227 0.275 MuHd_075 : 37.501 9.921 8.599 5.386 MuHd_095 : 19.594 11.389 8.040 3.306 MuHd_100 : 13.636 9.424 6.066 1.150 MuHd_105 : 12.723 10.314 4.475 1.444 Hmax_075 : 8.633 1.517 -0.119 2.660 Hmax_095 : -10.100 -1.500 -3.561 1.280 Hmax_100 : -10.600 -2.100 -4.229 0.820 Hmax_105 : -8.900 -0.817 -3.922 0.380 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9809 0.0191 DFMC : 0.9584 0.0416
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PcyM_1013700 MEILPLSDHSGEKKPEEREAAVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSLSYSIYTRHCPKISKLTDKCI 80 IGSSGMQSDIKTLHSLLKKKIELFVLEHAHYPDIHVIARLLCVILYSRRFFPYYTFNLLAGVSNENKGVLYNYDAIGSYC 160 EATHSCVGSGSALILPILDNRMEQKNQLIKNLNFNLRDDIDFVKDAITSATERDIYTGDKTEIYIIDHMGVNTTTLELKQ 240 D 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1013700 13 SDHSGEK|KP 0.071 . PcyM_1013700 14 DHSGEKK|PE 0.107 . PcyM_1013700 18 EKKPEER|EA 0.093 . PcyM_1013700 26 AAVEHGR|GF 0.095 . PcyM_1013700 29 EHGRGFK|RW 0.116 . PcyM_1013700 30 HGRGFKR|WN 0.190 . PcyM_1013700 47 VIGVTGK|DY 0.067 . PcyM_1013700 57 ILAADTR|LS 0.066 . PcyM_1013700 67 SYSIYTR|HC 0.089 . PcyM_1013700 71 YTRHCPK|IS 0.060 . PcyM_1013700 74 HCPKISK|LT 0.065 . PcyM_1013700 78 ISKLTDK|CI 0.077 . PcyM_1013700 91 GMQSDIK|TL 0.065 . PcyM_1013700 98 TLHSLLK|KK 0.065 . PcyM_1013700 99 LHSLLKK|KI 0.100 . PcyM_1013700 100 HSLLKKK|IE 0.096 . PcyM_1013700 119 DIHVIAR|LL 0.113 . PcyM_1013700 128 CVILYSR|RF 0.064 . PcyM_1013700 129 VILYSRR|FF 0.106 . PcyM_1013700 147 GVSNENK|GV 0.081 . PcyM_1013700 181 LPILDNR|ME 0.078 . PcyM_1013700 185 DNRMEQK|NQ 0.062 . PcyM_1013700 190 QKNQLIK|NL 0.067 . PcyM_1013700 197 NLNFNLR|DD 0.118 . PcyM_1013700 204 DDIDFVK|DA 0.080 . PcyM_1013700 213 ITSATER|DI 0.182 . PcyM_1013700 220 DIYTGDK|TE 0.062 . PcyM_1013700 239 TTTLELK|QD 0.062 . ____________________________^_________________

  • Fasta :-

    >PcyM_1013700 ATGGAAATCCTGCCGCTAAGTGACCACTCAGGAGAGAAGAAACCAGAGGAGAGGGAAGCC GCAGTGGAACATGGCCGCGGGTTCAAGCGATGGAACCCTTATGTCGACAATGGAGGAACC GTTATCGGAGTGACCGGCAAGGACTACGTCATCTTGGCCGCAGACACAAGACTCTCCCTG TCCTACTCAATTTACACGAGACACTGTCCCAAAATATCAAAACTAACGGATAAATGCATT ATCGGCTCCTCTGGGATGCAGTCCGACATCAAGACGCTGCACTCATTGCTGAAGAAAAAA ATTGAACTCTTCGTGCTGGAGCACGCGCACTACCCGGACATTCACGTCATAGCGAGGCTG CTCTGCGTGATTCTCTACAGCAGACGGTTTTTCCCCTACTACACGTTTAACCTGTTGGCG GGAGTGAGTAACGAAAACAAAGGAGTTCTTTACAATTACGATGCCATTGGATCCTACTGC GAAGCAACACACTCCTGTGTTGGAAGCGGATCGGCACTGATCCTTCCAATATTAGACAAC CGAATGGAACAGAAGAACCAGCTAATCAAAAACCTAAACTTCAACTTGCGGGACGACATC GATTTTGTTAAGGATGCTATTACGTCAGCCACGGAGAGGGACATATACACAGGAGACAAA ACAGAGATCTACATTATCGACCACATGGGTGTCAACACCACCACGCTGGAGCTGAAGCAG GATTAG
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  • Fasta :-

    MEILPLSDHSGEKKPEEREAAVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSL SYSIYTRHCPKISKLTDKCIIGSSGMQSDIKTLHSLLKKKIELFVLEHAHYPDIHVIARL LCVILYSRRFFPYYTFNLLAGVSNENKGVLYNYDAIGSYCEATHSCVGSGSALILPILDN RMEQKNQLIKNLNFNLRDDIDFVKDAITSATERDIYTGDKTEIYIIDHMGVNTTTLELKQ D

  • title: active site
  • coordinates: G39,D55,R57,K71,S169,D214,T217,G218
No Results
No Results
IDSitePeptideScoreMethod
PcyM_101370010 SLSDHSGEKK0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India