PcyM_1103100 | 26S proteasome regulatory subunit RPN11, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1103100OTHER0.9998070.0001050.000087
No Results

  • Fasta :-

    >PcyM_1103100 MAGIPSSLRELFYSFSDGNGMNNEALADTSEQVYISPLALLKILKHGRAGVPMEVMGLML GEIVDEYTIRIVDVFAMPQSGNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGF GCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVIDCFRLINPHMLMLGQEPRQTT SNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDVWGNPLKLIDFNEQK KNTDENLDSIKKLTALYNKNLRGEMKKTNQEIILENIGKIDAKKRIQNSVETLLNDSILT CIGTMANTLFF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1103100.fa Sequence name : PcyM_1103100 Sequence length : 311 VALUES OF COMPUTED PARAMETERS Coef20 : 3.578 CoefTot : 0.119 ChDiff : -1 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.247 0.009 0.507 MesoH : -0.556 0.442 -0.368 0.249 MuHd_075 : 15.094 6.912 2.675 2.757 MuHd_095 : 34.739 23.809 8.700 7.213 MuHd_100 : 35.617 25.115 8.374 7.698 MuHd_105 : 31.388 22.999 7.043 7.162 Hmax_075 : 3.588 5.500 -0.348 4.020 Hmax_095 : 20.100 18.800 3.112 6.460 Hmax_100 : 20.500 19.200 3.367 7.120 Hmax_105 : 15.750 12.950 2.364 4.865 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5430 0.4570 DFMC : 0.6757 0.3243
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 311 PcyM_1103100 MAGIPSSLRELFYSFSDGNGMNNEALADTSEQVYISPLALLKILKHGRAGVPMEVMGLMLGEIVDEYTIRIVDVFAMPQS 80 GNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGFGCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVID 160 CFRLINPHMLMLGQEPRQTTSNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDVWGNPLKLIDFNEQK 240 KNTDENLDSIKKLTALYNKNLRGEMKKTNQEIILENIGKIDAKKRIQNSVETLLNDSILTCIGTMANTLFF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1103100 9 GIPSSLR|EL 0.079 . PcyM_1103100 42 SPLALLK|IL 0.065 . PcyM_1103100 45 ALLKILK|HG 0.070 . PcyM_1103100 48 KILKHGR|AG 0.100 . PcyM_1103100 70 VDEYTIR|IV 0.105 . PcyM_1103100 102 NMLEELK|KT 0.069 . PcyM_1103100 103 MLEELKK|TG 0.098 . PcyM_1103100 106 ELKKTGR|HE 0.093 . PcyM_1103100 133 TDVNTQK|SF 0.099 . PcyM_1103100 141 FEQLNPR|TI 0.108 . PcyM_1103100 154 DPIQSVK|GK 0.062 . PcyM_1103100 156 IQSVKGK|VV 0.122 . PcyM_1103100 163 VVIDCFR|LI 0.086 . PcyM_1103100 177 MLGQEPR|QT 0.103 . PcyM_1103100 188 NIGYLTK|PT 0.073 . PcyM_1103100 200 LVHGLNR|NY 0.081 . PcyM_1103100 210 SIVINYR|KN 0.089 . PcyM_1103100 211 IVINYRK|NE 0.065 . PcyM_1103100 216 RKNELEK|NM 0.060 . PcyM_1103100 224 MLLNLHK|DV 0.080 . PcyM_1103100 232 VWGNPLK|LI 0.064 . PcyM_1103100 240 IDFNEQK|KN 0.065 . PcyM_1103100 241 DFNEQKK|NT 0.125 . PcyM_1103100 251 ENLDSIK|KL 0.062 . PcyM_1103100 252 NLDSIKK|LT 0.070 . PcyM_1103100 259 LTALYNK|NL 0.062 . PcyM_1103100 262 LYNKNLR|GE 0.100 . PcyM_1103100 266 NLRGEMK|KT 0.077 . PcyM_1103100 267 LRGEMKK|TN 0.109 . PcyM_1103100 279 ILENIGK|ID 0.066 . PcyM_1103100 283 IGKIDAK|KR 0.062 . PcyM_1103100 284 GKIDAKK|RI 0.110 . PcyM_1103100 285 KIDAKKR|IQ 0.211 . ____________________________^_________________

  • Fasta :-

    >PcyM_1103100 ATGGCGGGAATTCCCTCCTCCCTTCGAGAACTTTTTTATTCCTTCTCGGATGGCAATGGA ATGAACAATGAAGCGTTGGCGGACACCAGCGAGCAGGTGTACATCTCCCCCCTGGCCCTT CTGAAGATTTTGAAACATGGACGGGCAGGAGTGCCCATGGAAGTGATGGGGTTGATGCTG GGCGAAATAGTAGACGAATATACCATCCGAATTGTCGACGTCTTTGCGATGCCACAGTCA GGGAACAGTGTGAGTGTGGAGGCAGTGGACCCAGTGTACCAAACGAACATGTTAGAGGAA TTAAAAAAAACGGGGAGACACGAAATGGTTGTTGGATGGTACCACTCCCACCCTGGATTT GGCTGCTGGCTCTCCGGAACAGACGTAAATACACAAAAGAGTTTTGAACAATTAAACCCA AGGACAATCGGTGTTGTCGTAGATCCAATACAATCGGTCAAAGGAAAAGTAGTCATCGAT TGCTTTCGATTAATAAATCCACATATGCTAATGCTCGGACAAGAACCCAGACAAACCACA TCGAACATTGGCTACCTAACCAAACCAACCCTAACAGCACTAGTACATGGCCTCAACAGA AACTATTACTCCATAGTTATTAATTACAGAAAAAACGAATTAGAGAAAAATATGCTCTTA AATTTACACAAAGATGTTTGGGGCAACCCCTTAAAGCTAATTGACTTTAATGAGCAAAAA AAAAATACAGACGAAAATTTGGATAGCATTAAAAAGCTAACAGCTTTGTACAACAAAAAT TTACGAGGAGAAATGAAGAAAACGAATCAGGAAATTATTCTGGAGAATATCGGAAAGATA GATGCCAAAAAGAGAATCCAGAACTCCGTGGAAACGTTATTGAATGATTCTATTCTCACC TGCATCGGAACCATGGCAAACACTCTGTTCTTTTAG
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  • Fasta :-

    MAGIPSSLRELFYSFSDGNGMNNEALADTSEQVYISPLALLKILKHGRAGVPMEVMGLML GEIVDEYTIRIVDVFAMPQSGNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGF GCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVIDCFRLINPHMLMLGQEPRQTT SNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDVWGNPLKLIDFNEQK KNTDENLDSIKKLTALYNKNLRGEMKKTNQEIILENIGKIDAKKRIQNSVETLLNDSILT CIGTMANTLFF

  • title: MPN+ (JAMM) motif
  • coordinates: E54,H115,H117,S125,D128
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India