PcyM_1109900 | conserved Plasmodium protein, unknown function

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1109900OTHER0.9999840.0000150.000001
No Results

  • Fasta :-

    >PcyM_1109900 METAAKDGCNHVMQNDENKQEYLDFSDDFVFCSTCHNFSPYHKEGYLEKRCSNSWFGYSK RWFLLKNKKLYYFKSKESLRPSGVLDLELIHMDINYEHGIKRKRSGEDCFLYCIESRIYK NDSKKESLLILTPRNTGLSFYLRGEDAEIYEWYNLLNSSMTSNKIISQPNFIFSESNFWK IDRISVDVFESIADTGDIVLFRSNVASAKLQRIITRGEYDHIGMILRNDKNGIFLLEALS NMGIILTPWELFRKNRWNEAYTRIALRRLTWDNSEKNLKKLLHFLKNTIGKKYNLKIINF LAPKTDDAGYFCSELIGECWKIMGVIPVNTKCSYIWPSNFSEKFEEKMKLQEGCQLNNEL CIDFTL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1109900.fa Sequence name : PcyM_1109900 Sequence length : 366 VALUES OF COMPUTED PARAMETERS Coef20 : 2.858 CoefTot : 0.000 ChDiff : 3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.218 1.429 0.087 0.631 MesoH : -0.980 0.292 -0.482 0.168 MuHd_075 : 32.504 13.616 10.407 3.827 MuHd_095 : 31.560 24.978 11.351 6.829 MuHd_100 : 26.821 20.628 9.135 5.686 MuHd_105 : 17.856 13.497 6.032 3.781 Hmax_075 : 0.300 1.167 -1.516 1.270 Hmax_095 : 5.600 8.925 1.054 3.054 Hmax_100 : 2.400 5.300 -1.201 2.280 Hmax_105 : -2.400 3.000 -1.340 1.610 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9099 0.0901 DFMC : 0.8922 0.1078
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 366 PcyM_1109900 METAAKDGCNHVMQNDENKQEYLDFSDDFVFCSTCHNFSPYHKEGYLEKRCSNSWFGYSKRWFLLKNKKLYYFKSKESLR 80 PSGVLDLELIHMDINYEHGIKRKRSGEDCFLYCIESRIYKNDSKKESLLILTPRNTGLSFYLRGEDAEIYEWYNLLNSSM 160 TSNKIISQPNFIFSESNFWKIDRISVDVFESIADTGDIVLFRSNVASAKLQRIITRGEYDHIGMILRNDKNGIFLLEALS 240 NMGIILTPWELFRKNRWNEAYTRIALRRLTWDNSEKNLKKLLHFLKNTIGKKYNLKIINFLAPKTDDAGYFCSELIGECW 320 KIMGVIPVNTKCSYIWPSNFSEKFEEKMKLQEGCQLNNELCIDFTL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1109900 6 -METAAK|DG 0.069 . PcyM_1109900 19 MQNDENK|QE 0.063 . PcyM_1109900 43 NFSPYHK|EG 0.061 . PcyM_1109900 49 KEGYLEK|RC 0.065 . PcyM_1109900 50 EGYLEKR|CS 0.153 . PcyM_1109900 60 SWFGYSK|RW 0.057 . PcyM_1109900 61 WFGYSKR|WF 0.133 . PcyM_1109900 66 KRWFLLK|NK 0.060 . PcyM_1109900 68 WFLLKNK|KL 0.055 . PcyM_1109900 69 FLLKNKK|LY 0.072 . PcyM_1109900 74 KKLYYFK|SK 0.082 . PcyM_1109900 76 LYYFKSK|ES 0.059 . PcyM_1109900 80 KSKESLR|PS 0.093 . PcyM_1109900 101 NYEHGIK|RK 0.061 . PcyM_1109900 102 YEHGIKR|KR 0.166 . PcyM_1109900 103 EHGIKRK|RS 0.086 . PcyM_1109900 104 HGIKRKR|SG 0.322 . PcyM_1109900 117 LYCIESR|IY 0.069 . PcyM_1109900 120 IESRIYK|ND 0.216 . PcyM_1109900 124 IYKNDSK|KE 0.058 . PcyM_1109900 125 YKNDSKK|ES 0.103 . PcyM_1109900 134 LLILTPR|NT 0.101 . PcyM_1109900 143 GLSFYLR|GE 0.120 . PcyM_1109900 164 SSMTSNK|II 0.082 . PcyM_1109900 180 SESNFWK|ID 0.085 . PcyM_1109900 183 NFWKIDR|IS 0.095 . PcyM_1109900 202 GDIVLFR|SN 0.129 . PcyM_1109900 209 SNVASAK|LQ 0.071 . PcyM_1109900 212 ASAKLQR|II 0.141 . PcyM_1109900 216 LQRIITR|GE 0.130 . PcyM_1109900 227 HIGMILR|ND 0.083 . PcyM_1109900 230 MILRNDK|NG 0.087 . PcyM_1109900 253 TPWELFR|KN 0.104 . PcyM_1109900 254 PWELFRK|NR 0.067 . PcyM_1109900 256 ELFRKNR|WN 0.384 . PcyM_1109900 263 WNEAYTR|IA 0.089 . PcyM_1109900 267 YTRIALR|RL 0.076 . PcyM_1109900 268 TRIALRR|LT 0.159 . PcyM_1109900 276 TWDNSEK|NL 0.070 . PcyM_1109900 279 NSEKNLK|KL 0.061 . PcyM_1109900 280 SEKNLKK|LL 0.099 . PcyM_1109900 286 KLLHFLK|NT 0.064 . PcyM_1109900 291 LKNTIGK|KY 0.069 . PcyM_1109900 292 KNTIGKK|YN 0.097 . PcyM_1109900 296 GKKYNLK|II 0.061 . PcyM_1109900 304 INFLAPK|TD 0.066 . PcyM_1109900 321 LIGECWK|IM 0.069 . PcyM_1109900 331 VIPVNTK|CS 0.057 . PcyM_1109900 343 PSNFSEK|FE 0.091 . PcyM_1109900 347 SEKFEEK|MK 0.071 . PcyM_1109900 349 KFEEKMK|LQ 0.064 . ____________________________^_________________

  • Fasta :-

    >PcyM_1109900 ATGGAAACAGCGGCGAAAGATGGATGCAACCACGTCATGCAAAATGATGAAAATAAGCAG GAATATCTTGACTTTTCGGACGACTTTGTCTTCTGCTCGACCTGCCACAATTTCTCGCCG TACCACAAAGAAGGCTACCTAGAAAAAAGGTGTTCAAATTCCTGGTTCGGATACTCCAAA AGATGGTTCCTTCTGAAAAACAAAAAATTATATTACTTCAAAAGCAAAGAAAGCTTGAGG CCGTCGGGAGTCCTCGATCTAGAACTGATCCACATGGACATTAACTACGAACATGGGATA AAACGGAAACGAAGTGGCGAAGACTGCTTTCTGTATTGCATCGAATCGAGGATATACAAG AACGACAGCAAAAAGGAGTCGCTCCTAATTTTAACCCCCAGGAACACAGGTCTCAGCTTT TATTTAAGGGGTGAAGACGCGGAAATATACGAGTGGTACAACTTGCTAAACAGTTCCATG ACGAGCAATAAAATTATAAGTCAACCGAATTTTATTTTTTCGGAAAGTAACTTTTGGAAA ATCGACAGAATATCGGTTGATGTATTTGAGTCGATTGCGGACACGGGCGACATAGTCTTA TTCAGGTCAAACGTGGCTTCTGCGAAGCTGCAGAGGATCATAACGAGGGGCGAGTATGAT CACATCGGCATGATTCTCAGGAATGATAAAAATGGCATATTCCTCCTGGAGGCCTTATCC AACATGGGAATCATCCTAACTCCCTGGGAGCTTTTTAGAAAGAACCGCTGGAACGAGGCC TACACCAGAATTGCTCTGAGACGCCTGACCTGGGACAACTCTGAAAAAAATCTTAAAAAG TTGCTACATTTTCTTAAAAACACCATAGGGAAAAAATATAACCTCAAGATAATTAATTTT CTGGCCCCCAAAACTGATGACGCCGGCTATTTCTGCTCCGAGCTAATAGGAGAATGCTGG AAGATAATGGGTGTCATTCCTGTAAACACCAAATGCTCGTACATCTGGCCGAGCAATTTT TCCGAAAAGTTCGAAGAGAAAATGAAGTTACAGGAAGGCTGCCAGCTAAATAATGAGCTA TGCATAGACTTCACCCTGTGA
  • Download Fasta

  • Fasta :-

    METAAKDGCNHVMQNDENKQEYLDFSDDFVFCSTCHNFSPYHKEGYLEKRCSNSWFGYSK RWFLLKNKKLYYFKSKESLRPSGVLDLELIHMDINYEHGIKRKRSGEDCFLYCIESRIYK NDSKKESLLILTPRNTGLSFYLRGEDAEIYEWYNLLNSSMTSNKIISQPNFIFSESNFWK IDRISVDVFESIADTGDIVLFRSNVASAKLQRIITRGEYDHIGMILRNDKNGIFLLEALS NMGIILTPWELFRKNRWNEAYTRIALRRLTWDNSEKNLKKLLHFLKNTIGKKYNLKIINF LAPKTDDAGYFCSELIGECWKIMGVIPVNTKCSYIWPSNFSEKFEEKMKLQEGCQLNNEL CIDFTL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_1109900105 SKRKRSGEDC0.998unspPcyM_1109900123 SYKNDSKKES0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India