PcyM_1122700 | protein DJ-1, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_1122700OTHER0.9992800.0006790.000041
No Results

  • Fasta :-

    >PcyM_1122700 MSGKKTALVVVASGSEDVEYITTVDVLRRANISVTTASVEETEKVCLQSKNVVIADTLID KVKDNTFDVIIIPGGMKGSNAISNCPTVIEMLKAQKSSNRFYAAICAAPETVLHRHSLID DVEAVAYPSFESDFKHIGKGRVCVSKNCITSVGPGSAVEFALKIVEMLLSRDAALNLASG FLLHPSVTF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1122700.fa Sequence name : PcyM_1122700 Sequence length : 189 VALUES OF COMPUTED PARAMETERS Coef20 : 3.640 CoefTot : 0.014 ChDiff : -2 ZoneTo : 15 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.259 1.159 0.128 0.516 MesoH : -0.561 0.443 -0.341 0.211 MuHd_075 : 1.430 2.185 0.891 1.142 MuHd_095 : 21.675 10.989 7.287 4.121 MuHd_100 : 12.964 10.772 4.618 3.337 MuHd_105 : 5.930 9.719 1.071 2.054 Hmax_075 : 1.867 8.283 -0.384 2.840 Hmax_095 : 12.000 12.800 2.631 4.700 Hmax_100 : 4.800 11.200 0.447 3.980 Hmax_105 : 5.200 11.600 -0.368 3.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9654 0.0346 DFMC : 0.9358 0.0642
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 189 PcyM_1122700 MSGKKTALVVVASGSEDVEYITTVDVLRRANISVTTASVEETEKVCLQSKNVVIADTLIDKVKDNTFDVIIIPGGMKGSN 80 AISNCPTVIEMLKAQKSSNRFYAAICAAPETVLHRHSLIDDVEAVAYPSFESDFKHIGKGRVCVSKNCITSVGPGSAVEF 160 ALKIVEMLLSRDAALNLASGFLLHPSVTF 240 ................................................................................ 80 ................................................................................ 160 ............................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1122700 4 ---MSGK|KT 0.064 . PcyM_1122700 5 --MSGKK|TA 0.092 . PcyM_1122700 28 TTVDVLR|RA 0.101 . PcyM_1122700 29 TVDVLRR|AN 0.143 . PcyM_1122700 44 SVEETEK|VC 0.056 . PcyM_1122700 50 KVCLQSK|NV 0.067 . PcyM_1122700 61 ADTLIDK|VK 0.056 . PcyM_1122700 63 TLIDKVK|DN 0.075 . PcyM_1122700 77 IIPGGMK|GS 0.060 . PcyM_1122700 93 TVIEMLK|AQ 0.058 . PcyM_1122700 96 EMLKAQK|SS 0.066 . PcyM_1122700 100 AQKSSNR|FY 0.110 . PcyM_1122700 115 PETVLHR|HS 0.071 . PcyM_1122700 135 SFESDFK|HI 0.085 . PcyM_1122700 139 DFKHIGK|GR 0.059 . PcyM_1122700 141 KHIGKGR|VC 0.081 . PcyM_1122700 146 GRVCVSK|NC 0.074 . PcyM_1122700 163 AVEFALK|IV 0.069 . PcyM_1122700 171 VEMLLSR|DA 0.090 . ____________________________^_________________

  • Fasta :-

    >PcyM_1122700 ATGAGCGGAAAAAAAACAGCCTTAGTTGTAGTGGCATCAGGATCGGAAGATGTGGAATAT ATTACAACGGTCGATGTGCTAAGGAGAGCTAACATCAGCGTGACAACAGCGTCCGTGGAG GAAACGGAAAAGGTGTGCCTGCAGTCGAAGAATGTTGTCATTGCGGACACGCTAATTGAC AAGGTAAAGGATAACACCTTTGACGTAATCATCATTCCAGGAGGCATGAAAGGATCGAAC GCAATATCGAATTGTCCAACTGTTATTGAAATGTTGAAGGCACAGAAAAGTAGTAACAGA TTTTATGCGGCCATATGTGCAGCACCTGAAACTGTCCTACATCGCCATTCCCTAATTGAT GACGTTGAGGCAGTAGCATACCCATCGTTCGAAAGCGATTTCAAGCATATCGGCAAGGGA AGAGTGTGCGTTTCAAAGAACTGTATAACCTCTGTTGGCCCAGGATCTGCTGTTGAATTT GCTCTTAAAATTGTCGAAATGTTGTTAAGCAGAGATGCAGCCCTTAACCTTGCTAGCGGT TTTTTACTTCACCCATCTGTGACGTTTTAA
  • Download Fasta

  • Fasta :-

    MSGKKTALVVVASGSEDVEYITTVDVLRRANISVTTASVEETEKVCLQSKNVVIADTLID KVKDNTFDVIIIPGGMKGSNAISNCPTVIEMLKAQKSSNRFYAAICAAPETVLHRHSLID DVEAVAYPSFESDFKHIGKGRVCVSKNCITSVGPGSAVEFALKIVEMLLSRDAALNLASG FLLHPSVTF

    No Results
  • title: conserved cys residue
  • coordinates: C106
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PcyM_112270038 SVTTASVEET0.997unspPcyM_1122700117 SLHRHSLIDD0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India