PcyM_1230000 | proteasome subunit beta type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1230000OTHER0.9998040.0001200.000076
No Results

  • Fasta :-

    >PcyM_1230000 MKLEYMNALKEESGGFNFENVKRNEILKEKGITFPNFRKTGTTICGLVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLSAMAVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGSQHIRPYKQPNVRLYHL PQPTVFPKGTTPVLCQKIENIKKYITVEDA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1230000.fa Sequence name : PcyM_1230000 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.010 CoefTot : 0.009 ChDiff : 2 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 1.412 0.311 0.570 MesoH : 0.052 0.557 -0.159 0.306 MuHd_075 : 17.214 9.538 6.690 3.258 MuHd_095 : 8.226 4.104 2.244 1.828 MuHd_100 : 9.199 6.090 2.657 2.269 MuHd_105 : 12.659 9.819 3.762 2.627 Hmax_075 : 4.300 7.500 -0.461 3.580 Hmax_095 : -0.350 2.000 -3.047 2.340 Hmax_100 : 3.600 5.100 -1.215 3.560 Hmax_105 : 5.250 8.867 -1.524 2.753 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9859 0.0141 DFMC : 0.9603 0.0397
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PcyM_1230000 MKLEYMNALKEESGGFNFENVKRNEILKEKGITFPNFRKTGTTICGLVCQNAVILGADTRATEGPIVADKNCSKLHYISK 80 NIYCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVAMCVSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSS 160 CLLPFTALGSGSLSAMAVLEAKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGSQHIRPYKQPNVRLYHL 240 PQPTVFPKGTTPVLCQKIENIKKYITVEDA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1230000 2 -----MK|LE 0.057 . PcyM_1230000 10 EYMNALK|EE 0.064 . PcyM_1230000 22 FNFENVK|RN 0.057 . PcyM_1230000 23 NFENVKR|NE 0.154 . PcyM_1230000 28 KRNEILK|EK 0.082 . PcyM_1230000 30 NEILKEK|GI 0.061 . PcyM_1230000 38 ITFPNFR|KT 0.109 . PcyM_1230000 39 TFPNFRK|TG 0.073 . PcyM_1230000 60 ILGADTR|AT 0.099 . PcyM_1230000 70 GPIVADK|NC 0.065 . PcyM_1230000 74 ADKNCSK|LH 0.059 . PcyM_1230000 80 KLHYISK|NI 0.077 . PcyM_1230000 108 HNVELHR|LN 0.078 . PcyM_1230000 116 NTNTQPR|VA 0.109 . PcyM_1230000 123 VAMCVSR|LT 0.092 . PcyM_1230000 130 LTQELFK|YQ 0.074 . PcyM_1230000 135 FKYQGYK|VC 0.069 . PcyM_1230000 182 MAVLEAK|YR 0.065 . PcyM_1230000 184 VLEAKYR|DN 0.162 . PcyM_1230000 193 MTIEEGK|EL 0.057 . PcyM_1230000 221 DICVITK|DG 0.074 . PcyM_1230000 228 DGSQHIR|PY 0.101 . PcyM_1230000 231 QHIRPYK|QP 0.117 . PcyM_1230000 236 YKQPNVR|LY 0.091 . PcyM_1230000 248 QPTVFPK|GT 0.100 . PcyM_1230000 257 TPVLCQK|IE 0.060 . PcyM_1230000 262 QKIENIK|KY 0.068 . PcyM_1230000 263 KIENIKK|YI 0.108 . ____________________________^_________________

  • Fasta :-

    >PcyM_1230000 ATGAAACTCGAATATATGAATGCACTGAAAGAAGAAAGTGGAGGATTTAATTTTGAAAAT GTCAAGAGAAATGAAATTTTGAAGGAAAAAGGAATAACCTTTCCCAATTTTCGAAAAACG GGAACAACCATATGTGGCTTGGTGTGCCAAAATGCGGTTATTTTGGGAGCTGATACCAGA GCTACGGAAGGTCCAATAGTAGCAGATAAAAATTGTAGCAAATTACACTATATAAGTAAA AATATATACTGTGCAGGTGCAGGGGTAGCCGGAGACCTGGAGCATACTACCTTATGGTTG CAACACAATGTCGAATTGCATCGTTTAAATACGAACACACAGCCCCGAGTAGCCATGTGT GTTTCAAGATTGACACAAGAGCTGTTTAAGTACCAAGGATATAAAGTGTGTGCAATTGTG TTAGGAGGGGTAGATGTTACCGGCCCTCAGCTGTATGGTATTCACCCACATGGTTCTTCC TGTTTATTACCCTTCACGGCTTTGGGTTCTGGATCCCTTAGTGCTATGGCTGTATTGGAG GCTAAATACAGGGATAATATGACGATAGAAGAAGGGAAAGAACTCGTGTGCGAAGCTATA TGTGCCGGTATTTTTAACGATCTGGGTTCAGGTGGAAATGTGGACATTTGCGTTATAACG AAGGACGGTTCGCAACACATAAGACCGTATAAGCAGCCGAACGTTCGACTATATCACCTG CCGCAACCGACTGTTTTTCCAAAGGGAACCACCCCTGTGTTGTGCCAAAAAATTGAAAAT ATAAAAAAATACATCACTGTGGAGGATGCATGA
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  • Fasta :-

    MKLEYMNALKEESGGFNFENVKRNEILKEKGITFPNFRKTGTTICGLVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLSAMAVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGSQHIRPYKQPNVRLYHL PQPTVFPKGTTPVLCQKIENIKKYITVEDA

  • title: active site
  • coordinates: T42,D58,R60,K74,S170,D207,S210,G211
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India