PcyM_1241100 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1241100OTHER0.9900490.0096550.000296
No Results

  • Fasta :-

    >PcyM_1241100 MDTLIGLKGKNFIILAVDTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTDMFVKSFAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDY LSNMDAVNKGAHGYGAYLVNGILDKYYHENMNLEEALLIFKKCFEELKKRFLLTQINYEL RIMTDNKVEAQYVTI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1241100.fa Sequence name : PcyM_1241100 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.734 CoefTot : -0.591 ChDiff : 3 ZoneTo : 17 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.435 1.418 -0.043 0.499 MesoH : -1.306 -0.064 -0.579 0.109 MuHd_075 : 6.145 4.304 2.101 0.914 MuHd_095 : 21.558 12.602 5.106 4.028 MuHd_100 : 11.035 5.028 3.312 2.344 MuHd_105 : 9.900 3.953 3.846 1.019 Hmax_075 : 5.367 15.633 1.625 5.693 Hmax_095 : 8.662 14.700 1.181 5.197 Hmax_100 : 8.600 14.700 0.947 4.840 Hmax_105 : 5.000 14.467 0.653 4.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9947 0.0053 DFMC : 0.9955 0.0045
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PcyM_1241100 MDTLIGLKGKNFIILAVDTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEFIRKNVHLYQYQNSTDMFVKS 80 FAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDYLSNMDAVNKGAHGYGAYLVNGILDKYYHENMNLEEALLIF 160 KKCFEELKKRFLLTQINYELRIMTDNKVEAQYVTI 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1241100 8 DTLIGLK|GK 0.055 . PcyM_1241100 10 LIGLKGK|NF 0.063 . PcyM_1241100 27 SVNSIIK|LK 0.061 . PcyM_1241100 29 NSIIKLK|ND 0.062 . PcyM_1241100 33 KLKNDDK|TK 0.060 . PcyM_1241100 35 KNDDKTK|FY 0.078 . PcyM_1241100 43 YDINGNK|CL 0.058 . PcyM_1241100 54 GGSIGDR|IQ 0.084 . PcyM_1241100 62 QFGEFIR|KN 0.072 . PcyM_1241100 63 FGEFIRK|NV 0.099 . PcyM_1241100 79 STDMFVK|SF 0.069 . PcyM_1241100 86 SFAFFTR|KN 0.091 . PcyM_1241100 87 FAFFTRK|NL 0.075 . PcyM_1241100 94 NLAYYLR|RN 0.078 . PcyM_1241100 95 LAYYLRR|NP 0.107 . PcyM_1241100 110 IAGYDNK|DG 0.067 . PcyM_1241100 129 NMDAVNK|GA 0.078 . PcyM_1241100 145 VNGILDK|YY 0.068 . PcyM_1241100 161 EALLIFK|KC 0.056 . PcyM_1241100 162 ALLIFKK|CF 0.092 . PcyM_1241100 168 KCFEELK|KR 0.054 . PcyM_1241100 169 CFEELKK|RF 0.065 . PcyM_1241100 170 FEELKKR|FL 0.233 . PcyM_1241100 181 QINYELR|IM 0.084 . PcyM_1241100 187 RIMTDNK|VE 0.060 . ____________________________^_________________

  • Fasta :-

    >PcyM_1241100 ATGGATACGCTAATCGGCCTGAAGGGCAAAAACTTCATAATCCTTGCGGTAGATACGTAC AGCGTTAATTCAATTATCAAGTTAAAGAATGACGACAAGACCAAGTTTTACGACATTAAC GGAAACAAATGCTTACTGTTGGGTGGATCCATTGGAGATAGAATTCAGTTTGGTGAATTC ATAAGGAAGAATGTGCACCTGTACCAGTACCAGAACTCTACCGATATGTTTGTGAAATCG TTTGCCTTTTTTACGCGCAAGAATTTGGCCTACTATTTGAGGAGAAACCCCTACGAGGTC AACTGCCTCATAGCTGGATACGACAACAAGGACGGTTACCAACTCTACTGGTGCGACTAC CTTAGCAACATGGACGCTGTGAACAAGGGTGCGCACGGTTACGGAGCGTACCTAGTGAAC GGTATCCTGGATAAGTACTACCATGAAAATATGAACCTGGAAGAAGCCTTACTCATCTTT AAAAAGTGTTTTGAAGAATTGAAGAAGAGATTTCTCCTGACCCAAATAAATTACGAACTA CGGATTATGACAGATAACAAGGTAGAGGCTCAGTACGTGACCATTTGA
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  • Fasta :-

    MDTLIGLKGKNFIILAVDTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTDMFVKSFAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDY LSNMDAVNKGAHGYGAYLVNGILDKYYHENMNLEEALLIFKKCFEELKKRFLLTQINYEL RIMTDNKVEAQYVTI

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India