PcyM_1243700 | derlin-1, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_1243700OTHER0.9998930.0000870.000020
No Results

  • Fasta :-

    >PcyM_1243700 MVQLGEILGTIPLITRVYLILSSVLMVLCSLDIISPLSLYLNWNLVLTEHQYWRLITCFL YFGSFGLHFFWDAYVLIYYCSSLEDVTFRNNSADFLWMIIVSCMMLLIVSYLFGGVYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTLLSLIVDYNSNDNFFGILVGHIY FFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1243700.fa Sequence name : PcyM_1243700 Sequence length : 213 VALUES OF COMPUTED PARAMETERS Coef20 : 4.045 CoefTot : -1.000 ChDiff : 0 ZoneTo : 71 KR : 2 DE : 3 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.424 2.441 0.496 0.813 MesoH : 1.018 1.211 0.060 0.512 MuHd_075 : 24.034 20.073 6.614 5.888 MuHd_095 : 19.697 18.554 5.636 5.318 MuHd_100 : 24.309 21.087 7.089 6.927 MuHd_105 : 30.864 24.245 7.776 7.788 Hmax_075 : 9.683 13.400 -0.241 7.460 Hmax_095 : 12.688 26.775 4.071 7.341 Hmax_100 : 20.600 28.800 4.297 7.290 Hmax_105 : 17.600 24.600 4.007 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9816 0.0184 DFMC : 0.9758 0.0242
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 213 PcyM_1243700 MVQLGEILGTIPLITRVYLILSSVLMVLCSLDIISPLSLYLNWNLVLTEHQYWRLITCFLYFGSFGLHFFWDAYVLIYYC 80 SSLEDVTFRNNSADFLWMIIVSCMMLLIVSYLFGGVYFYSSCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTLLS 160 LIVDYNSNDNFFGILVGHIYFFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ 240 ................................................................................ 80 ................................................................................ 160 ..................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1243700 16 TIPLITR|VY 0.061 . PcyM_1243700 54 TEHQYWR|LI 0.097 . PcyM_1243700 89 LEDVTFR|NN 0.102 . PcyM_1243700 133 ITYVWSK|NN 0.065 . PcyM_1243700 139 KNNSSTR|LT 0.102 . PcyM_1243700 148 IFFFTIK|AS 0.053 . PcyM_1243700 194 PLMPVAK|NT 0.068 . PcyM_1243700 200 KNTQIFK|TP 0.056 . PcyM_1243700 206 KTPQILK|WL 0.065 . PcyM_1243700 210 ILKWLLK|QE 0.061 . ____________________________^_________________

  • Fasta :-

    >PcyM_1243700 ATGGTTCAGTTGGGCGAGATCCTCGGCACAATTCCGCTAATAACTCGCGTATACCTTATC CTCTCCTCCGTTCTGATGGTCCTATGCTCCCTGGACATCATATCCCCCTTGAGCCTATAC CTAAATTGGAACTTAGTCCTGACTGAGCATCAGTACTGGAGACTCATCACCTGCTTCTTG TACTTCGGGTCCTTCGGGCTTCATTTTTTTTGGGATGCCTACGTTTTAATATACTACTGC AGCTCACTGGAAGATGTTACCTTTAGGAATAATTCTGCCGACTTCCTATGGATGATTATT GTGTCCTGCATGATGCTGCTGATCGTTTCGTACCTTTTCGGGGGCGTGTACTTTTACAGC AGCTGCATAATAAATGTGATCACTTATGTGTGGAGCAAGAACAATTCCTCGACGCGCCTG ACCATTTTTTTTTTCACCATAAAGGCGTCCTACCTGCCGTGGGTGCTAACCTTGCTCTCC CTAATTGTCGACTACAACTCGAATGATAACTTTTTTGGTATTCTAGTGGGACATATCTAC TTCTTCTTCACGAACGTATTCCCCCTCATGCCCGTCGCCAAGAACACGCAAATTTTTAAA ACCCCCCAAATTTTGAAATGGCTGCTCAAGCAGGAGCAGTAA
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  • Fasta :-

    MVQLGEILGTIPLITRVYLILSSVLMVLCSLDIISPLSLYLNWNLVLTEHQYWRLITCFL YFGSFGLHFFWDAYVLIYYCSSLEDVTFRNNSADFLWMIIVSCMMLLIVSYLFGGVYFYS SCIINVITYVWSKNNSSTRLTIFFFTIKASYLPWVLTLLSLIVDYNSNDNFFGILVGHIY FFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India