PcyM_1252900 | ubiquitin carboxyl-terminal hydrolase isozyme L3, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1252900OTHER0.9997050.0000740.000221
No Results

  • Fasta :-

    >PcyM_1252900 MLRNNIWVPIESNPESLYLYSCKLGQSKLTFQDIYGFDAELLDMIPQPVHAIILLYPLKE GMSNSNTETDGSTEQNIDNIWFIKQVVPNSCGTVALFHLYGNLKNKFELDKDSLLANFFD KVKDMTPEKRGQEFEVNKSIELLHHEFSGKASSTGDDIDVDTHFIVFVEIDGRLVELDGR KDHPVIHCTTTAASFKYDTGNVIQKKFIEKCKDDNRFSALAVVSSDAV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1252900.fa Sequence name : PcyM_1252900 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.655 CoefTot : -0.264 ChDiff : -12 ZoneTo : 10 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.688 1.265 -0.047 0.555 MesoH : -0.657 0.062 -0.462 0.214 MuHd_075 : 12.737 13.448 3.280 3.584 MuHd_095 : 25.689 16.717 6.773 4.952 MuHd_100 : 19.140 14.230 6.103 2.975 MuHd_105 : 8.057 7.948 4.102 0.539 Hmax_075 : 6.125 7.000 -1.052 3.456 Hmax_095 : 5.163 8.662 -0.077 4.130 Hmax_100 : 7.400 10.700 0.630 4.160 Hmax_105 : 2.450 4.667 -1.264 2.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8885 0.1115 DFMC : 0.9409 0.0591
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 PcyM_1252900 MLRNNIWVPIESNPESLYLYSCKLGQSKLTFQDIYGFDAELLDMIPQPVHAIILLYPLKEGMSNSNTETDGSTEQNIDNI 80 WFIKQVVPNSCGTVALFHLYGNLKNKFELDKDSLLANFFDKVKDMTPEKRGQEFEVNKSIELLHHEFSGKASSTGDDIDV 160 DTHFIVFVEIDGRLVELDGRKDHPVIHCTTTAASFKYDTGNVIQKKFIEKCKDDNRFSALAVVSSDAV 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1252900 3 ----MLR|NN 0.081 . PcyM_1252900 23 LYLYSCK|LG 0.063 . PcyM_1252900 28 CKLGQSK|LT 0.066 . PcyM_1252900 59 ILLYPLK|EG 0.057 . PcyM_1252900 84 DNIWFIK|QV 0.075 . PcyM_1252900 104 HLYGNLK|NK 0.060 . PcyM_1252900 106 YGNLKNK|FE 0.069 . PcyM_1252900 111 NKFELDK|DS 0.062 . PcyM_1252900 121 LANFFDK|VK 0.064 . PcyM_1252900 123 NFFDKVK|DM 0.070 . PcyM_1252900 129 KDMTPEK|RG 0.059 . PcyM_1252900 130 DMTPEKR|GQ 0.156 . PcyM_1252900 138 QEFEVNK|SI 0.087 . PcyM_1252900 150 HHEFSGK|AS 0.080 . PcyM_1252900 173 FVEIDGR|LV 0.083 . PcyM_1252900 180 LVELDGR|KD 0.084 . PcyM_1252900 181 VELDGRK|DH 0.071 . PcyM_1252900 196 TTAASFK|YD 0.078 . PcyM_1252900 205 TGNVIQK|KF 0.068 . PcyM_1252900 206 GNVIQKK|FI 0.185 . PcyM_1252900 210 QKKFIEK|CK 0.073 . PcyM_1252900 212 KFIEKCK|DD 0.066 . PcyM_1252900 216 KCKDDNR|FS 0.083 . ____________________________^_________________

  • Fasta :-

    >PcyM_1252900 ATGCTTCGGAACAATATTTGGGTTCCCATCGAGTCCAACCCGGAGTCCCTCTACCTTTAC TCCTGCAAACTTGGACAGTCAAAGTTGACGTTTCAGGATATCTATGGGTTTGATGCGGAG CTCTTAGATATGATCCCGCAACCCGTACACGCAATAATACTCTTATACCCCCTGAAAGAA GGCATGAGCAATTCAAATACTGAAACGGATGGAAGTACTGAGCAAAATATAGACAATATT TGGTTCATAAAACAGGTTGTTCCGAATTCATGCGGAACGGTGGCCCTTTTTCACCTCTAC GGAAATTTAAAGAATAAATTTGAGCTAGACAAGGACTCCCTCTTGGCTAATTTTTTCGAC AAGGTGAAGGACATGACGCCCGAAAAACGCGGACAGGAATTCGAAGTAAACAAGAGCATC GAACTGCTTCATCACGAATTTTCAGGAAAGGCTTCCAGCACGGGGGATGACATAGACGTT GATACCCACTTTATCGTCTTTGTCGAAATTGACGGGAGGCTCGTCGAACTGGACGGAAGG AAGGACCATCCCGTTATTCATTGCACGACAACTGCTGCCAGTTTCAAATACGACACGGGA AATGTAATACAAAAAAAATTCATAGAAAAATGCAAAGATGACAACAGATTTTCAGCCTTA GCAGTTGTATCAAGTGATGCTGTGTAG
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  • Fasta :-

    MLRNNIWVPIESNPESLYLYSCKLGQSKLTFQDIYGFDAELLDMIPQPVHAIILLYPLKE GMSNSNTETDGSTEQNIDNIWFIKQVVPNSCGTVALFHLYGNLKNKFELDKDSLLANFFD KVKDMTPEKRGQEFEVNKSIELLHHEFSGKASSTGDDIDVDTHFIVFVEIDGRLVELDGR KDHPVIHCTTTAASFKYDTGNVIQKKFIEKCKDDNRFSALAVVSSDAV

  • title: catalytic site
  • coordinates: Q85,C91,H163,D178
No Results
No Results
IDSitePeptideScoreMethod
PcyM_1252900153 SGKASSTGDD0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India