PcyM_1256400 | signal peptide peptidase, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1256400OTHER0.9999570.0000010.000042
No Results

  • Fasta :-

    >PcyM_1256400 MNLLKLISKNNKKMKNDNMGCSIIYYSSYVIILLTIVLSKFFVIPLMAQMFLYTFITIYI GSHDSLKQLEQVDDKNKKADNITAYDAIMFPIIGSGALLTLYFAYKFLDPYYVNMLLTVY LTLAGVFSLQGVCANILEPALPTFFKKDEYVKTFKLPGFISKEPVVFNTNKGEIISFLFC FFIGARWIFYKDFITHNVLAVSFCFQAISLVILSNFLIGFLLLSGLFVYDIFWVFGNDVM VTVAKSFEAPVKLLFPVSKDPVHYSMLGLGDIIIPGIVISLCLRFDYYLHRNKIHKGNFK KMFNDISIHEAFKKYYFFTISVFYQIGLVVTYCMLFYFEHAQPALLYLVPACILAIVGCS LCKGEFKIMVKYQEITDKSNVSDDGKKKVADKDEMYKSQESIISNAKKRITNK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1256400.fa Sequence name : PcyM_1256400 Sequence length : 413 VALUES OF COMPUTED PARAMETERS Coef20 : 3.504 CoefTot : -1.729 ChDiff : 11 ZoneTo : 63 KR : 6 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.065 2.612 0.649 0.844 MesoH : 1.017 1.509 0.051 0.598 MuHd_075 : 26.833 24.913 7.332 7.103 MuHd_095 : 33.660 19.741 9.063 6.958 MuHd_100 : 30.426 19.072 9.375 6.893 MuHd_105 : 30.380 20.405 9.724 7.302 Hmax_075 : 10.267 26.367 4.830 7.840 Hmax_095 : -2.538 4.375 -3.923 1.592 Hmax_100 : -2.300 3.500 -3.611 1.900 Hmax_105 : 3.700 8.167 -2.229 2.987 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7326 0.2674 DFMC : 0.6669 0.3331
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 413 PcyM_1256400 MNLLKLISKNNKKMKNDNMGCSIIYYSSYVIILLTIVLSKFFVIPLMAQMFLYTFITIYIGSHDSLKQLEQVDDKNKKAD 80 NITAYDAIMFPIIGSGALLTLYFAYKFLDPYYVNMLLTVYLTLAGVFSLQGVCANILEPALPTFFKKDEYVKTFKLPGFI 160 SKEPVVFNTNKGEIISFLFCFFIGARWIFYKDFITHNVLAVSFCFQAISLVILSNFLIGFLLLSGLFVYDIFWVFGNDVM 240 VTVAKSFEAPVKLLFPVSKDPVHYSMLGLGDIIIPGIVISLCLRFDYYLHRNKIHKGNFKKMFNDISIHEAFKKYYFFTI 320 SVFYQIGLVVTYCMLFYFEHAQPALLYLVPACILAIVGCSLCKGEFKIMVKYQEITDKSNVSDDGKKKVADKDEMYKSQE 400 SIISNAKKRITNK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1256400 5 --MNLLK|LI 0.069 . PcyM_1256400 9 LLKLISK|NN 0.058 . PcyM_1256400 12 LISKNNK|KM 0.063 . PcyM_1256400 13 ISKNNKK|MK 0.113 . PcyM_1256400 15 KNNKKMK|ND 0.087 . PcyM_1256400 40 LTIVLSK|FF 0.062 . PcyM_1256400 67 GSHDSLK|QL 0.085 . PcyM_1256400 75 LEQVDDK|NK 0.059 . PcyM_1256400 77 QVDDKNK|KA 0.066 . PcyM_1256400 78 VDDKNKK|AD 0.083 . PcyM_1256400 106 TLYFAYK|FL 0.086 . PcyM_1256400 146 ALPTFFK|KD 0.065 . PcyM_1256400 147 LPTFFKK|DE 0.128 . PcyM_1256400 152 KKDEYVK|TF 0.054 . PcyM_1256400 155 EYVKTFK|LP 0.059 . PcyM_1256400 162 LPGFISK|EP 0.060 . PcyM_1256400 171 VVFNTNK|GE 0.063 . PcyM_1256400 186 CFFIGAR|WI 0.085 . PcyM_1256400 191 ARWIFYK|DF 0.091 . PcyM_1256400 245 VMVTVAK|SF 0.090 . PcyM_1256400 252 SFEAPVK|LL 0.069 . PcyM_1256400 259 LLFPVSK|DP 0.069 . PcyM_1256400 284 VISLCLR|FD 0.077 . PcyM_1256400 291 FDYYLHR|NK 0.086 . PcyM_1256400 293 YYLHRNK|IH 0.055 . PcyM_1256400 296 HRNKIHK|GN 0.102 . PcyM_1256400 300 IHKGNFK|KM 0.063 . PcyM_1256400 301 HKGNFKK|MF 0.133 . PcyM_1256400 313 SIHEAFK|KY 0.060 . PcyM_1256400 314 IHEAFKK|YY 0.115 . PcyM_1256400 363 VGCSLCK|GE 0.063 . PcyM_1256400 367 LCKGEFK|IM 0.061 . PcyM_1256400 371 EFKIMVK|YQ 0.062 . PcyM_1256400 378 YQEITDK|SN 0.069 . PcyM_1256400 386 NVSDDGK|KK 0.062 . PcyM_1256400 387 VSDDGKK|KV 0.115 . PcyM_1256400 388 SDDGKKK|VA 0.152 . PcyM_1256400 392 KKKVADK|DE 0.069 . PcyM_1256400 397 DKDEMYK|SQ 0.078 . PcyM_1256400 407 SIISNAK|KR 0.059 . PcyM_1256400 408 IISNAKK|RI 0.142 . PcyM_1256400 409 ISNAKKR|IT 0.341 . PcyM_1256400 413 KKRITNK|-- 0.074 . ____________________________^_________________

  • Fasta :-

    >PcyM_1256400 ATGAATTTACTCAAGCTAATTAGTAAGAACAATAAAAAAATGAAGAACGATAATATGGGA TGTTCCATAATTTATTATTCCAGCTATGTTATAATACTCCTAACCATCGTGCTCTCGAAG TTTTTTGTGATCCCGTTGATGGCTCAAATGTTTTTGTACACATTTATAACGATATATATC GGGAGCCATGACAGTTTGAAGCAATTAGAGCAAGTTGACGACAAAAATAAGAAGGCCGAT AATATTACAGCCTACGATGCGATTATGTTCCCCATTATCGGCTCAGGAGCCTTGTTAACG CTGTATTTTGCGTACAAGTTTTTAGACCCGTACTATGTGAATATGCTTCTGACGGTTTAC CTAACCCTAGCAGGAGTTTTCTCACTACAAGGGGTTTGTGCTAACATTTTGGAACCTGCT TTGCCGACATTTTTCAAAAAAGACGAATATGTTAAGACGTTTAAATTGCCGGGATTCATT TCGAAGGAGCCCGTCGTTTTCAACACAAACAAAGGAGAAATAATCAGCTTCCTGTTTTGC TTCTTCATCGGTGCGCGATGGATTTTTTATAAAGACTTTATCACTCACAATGTGTTAGCT GTGTCCTTTTGTTTCCAAGCCATATCGCTAGTCATCCTGAGCAACTTTTTAATTGGATTC CTGCTACTCTCTGGACTCTTCGTGTATGACATATTCTGGGTTTTTGGAAACGACGTTATG GTGACCGTTGCGAAGTCATTCGAAGCACCCGTAAAACTCCTTTTCCCAGTATCGAAAGAC CCAGTACATTACAGCATGCTAGGGTTAGGGGACATCATCATCCCCGGTATTGTAATATCA CTGTGTCTACGTTTCGACTATTATCTACACAGAAATAAGATACACAAAGGAAATTTCAAA AAAATGTTTAACGACATATCAATTCATGAGGCCTTCAAAAAATACTATTTCTTTACCATT TCGGTTTTCTACCAAATAGGGTTGGTAGTGACATACTGTATGCTCTTTTATTTCGAGCAT GCACAGCCTGCTTTGTTGTACCTCGTGCCTGCCTGTATATTGGCAATAGTAGGGTGTTCT TTATGCAAAGGGGAATTTAAAATCATGGTGAAGTACCAGGAAATTACGGATAAGAGTAAT GTTTCGGATGATGGGAAGAAGAAAGTCGCTGATAAGGACGAAATGTACAAAAGTCAAGAG TCCATCATATCTAACGCGAAGAAGAGAATTACTAATAAGTAG
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  • Fasta :-

    MNLLKLISKNNKKMKNDNMGCSIIYYSSYVIILLTIVLSKFFVIPLMAQMFLYTFITIYI GSHDSLKQLEQVDDKNKKADNITAYDAIMFPIIGSGALLTLYFAYKFLDPYYVNMLLTVY LTLAGVFSLQGVCANILEPALPTFFKKDEYVKTFKLPGFISKEPVVFNTNKGEIISFLFC FFIGARWIFYKDFITHNVLAVSFCFQAISLVILSNFLIGFLLLSGLFVYDIFWVFGNDVM VTVAKSFEAPVKLLFPVSKDPVHYSMLGLGDIIIPGIVISLCLRFDYYLHRNKIHKGNFK KMFNDISIHEAFKKYYFFTISVFYQIGLVVTYCMLFYFEHAQPALLYLVPACILAIVGCS LCKGEFKIMVKYQEITDKSNVSDDGKKKVADKDEMYKSQESIISNAKKRITNK

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India