PcyM_1407100 | membrane integral peptidase, M50 family, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_1407100OTHER0.9999580.0000060.000037
No Results

  • Fasta :-

    >PcyM_1407100 MDPKNNMFFCSNTLMEHRRVASNFLSMSREKSYAYERHQDGVSFILSLFPLLIISGVHLW IKTNGYYIGNLFLMITYFFSFFFFILYYYNSYAVFVLFVFFSFFISLCLHEFAHALVAYK YGDITMVYKGYLYLDIVNYLDIFHTLIIPCIMLLTTGFGLPGNLYWLQLHFIRSRFQLSF IYLSGPISDILCILVIVFFYNFYAYFKNNKNLSVQPNSILFISLATAASFLVDSFLLNIC PIFGFDGWGILEPYLPYCVNSLINEEIVNTYLSYICPLMVFIYFNFIETKYLFFTKIVNF ILARILGIEISHVTIGVNAFPTLYAYLRNV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1407100.fa Sequence name : PcyM_1407100 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.981 CoefTot : -0.374 ChDiff : 0 ZoneTo : 29 KR : 4 DE : 2 CleavSite : 31 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.724 2.824 0.553 0.926 MesoH : 1.520 1.523 0.118 0.675 MuHd_075 : 21.657 23.028 7.971 5.951 MuHd_095 : 25.319 17.868 7.424 6.884 MuHd_100 : 30.194 19.543 8.372 7.388 MuHd_105 : 38.494 21.862 8.711 8.860 Hmax_075 : 7.612 15.138 1.762 3.614 Hmax_095 : 12.950 12.250 1.749 4.428 Hmax_100 : 10.100 11.200 1.572 3.390 Hmax_105 : 12.483 10.600 -0.098 4.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8105 0.1895 DFMC : 0.8459 0.1541
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PcyM_1407100 MDPKNNMFFCSNTLMEHRRVASNFLSMSREKSYAYERHQDGVSFILSLFPLLIISGVHLWIKTNGYYIGNLFLMITYFFS 80 FFFFILYYYNSYAVFVLFVFFSFFISLCLHEFAHALVAYKYGDITMVYKGYLYLDIVNYLDIFHTLIIPCIMLLTTGFGL 160 PGNLYWLQLHFIRSRFQLSFIYLSGPISDILCILVIVFFYNFYAYFKNNKNLSVQPNSILFISLATAASFLVDSFLLNIC 240 PIFGFDGWGILEPYLPYCVNSLINEEIVNTYLSYICPLMVFIYFNFIETKYLFFTKIVNFILARILGIEISHVTIGVNAF 320 PTLYAYLRNV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1407100 4 ---MDPK|NN 0.056 . PcyM_1407100 18 NTLMEHR|RV 0.089 . PcyM_1407100 19 TLMEHRR|VA 0.269 . PcyM_1407100 29 NFLSMSR|EK 0.073 . PcyM_1407100 31 LSMSREK|SY 0.091 . PcyM_1407100 37 KSYAYER|HQ 0.091 . PcyM_1407100 62 GVHLWIK|TN 0.073 . PcyM_1407100 120 HALVAYK|YG 0.063 . PcyM_1407100 129 DITMVYK|GY 0.057 . PcyM_1407100 173 LQLHFIR|SR 0.101 . PcyM_1407100 175 LHFIRSR|FQ 0.073 . PcyM_1407100 207 NFYAYFK|NN 0.055 . PcyM_1407100 210 AYFKNNK|NL 0.069 . PcyM_1407100 290 FNFIETK|YL 0.062 . PcyM_1407100 296 KYLFFTK|IV 0.079 . PcyM_1407100 304 VNFILAR|IL 0.115 . PcyM_1407100 328 TLYAYLR|NV 0.124 . ____________________________^_________________

  • Fasta :-

    >PcyM_1407100 ATGGATCCAAAAAACAACATGTTCTTTTGCAGCAACACACTAATGGAACACAGAAGAGTA GCCAGCAATTTCCTTTCCATGAGCAGAGAAAAAAGTTACGCTTATGAGAGGCACCAAGAC GGCGTGTCGTTTATTTTATCTTTGTTCCCTTTGTTAATAATAAGTGGGGTTCATCTTTGG ATAAAAACAAATGGTTACTACATTGGGAATTTATTCCTAATGATAACTTATTTCTTTTCT TTTTTTTTCTTCATTTTGTATTATTATAATTCTTATGCAGTTTTTGTCCTATTTGTGTTT TTCTCCTTTTTCATATCATTATGTTTACACGAATTTGCCCACGCCCTTGTTGCGTACAAA TACGGAGACATTACGATGGTTTACAAAGGCTACCTCTATCTGGACATTGTAAATTATTTA GACATTTTTCATACCCTCATAATACCATGTATAATGCTGCTTACAACAGGCTTTGGGTTA CCAGGAAATTTATATTGGCTACAACTACATTTTATAAGAAGCAGATTTCAGCTGTCATTT ATTTATTTATCAGGCCCCATATCAGACATTTTGTGTATTCTGGTAATTGTTTTTTTTTAC AATTTTTACGCATACTTTAAGAATAACAAAAATTTAAGTGTACAGCCGAACTCGATTTTA TTCATATCTCTTGCGACGGCTGCTTCTTTCCTCGTGGATTCTTTTCTTTTAAACATTTGT CCAATTTTTGGCTTTGACGGATGGGGAATCTTGGAGCCCTACCTTCCCTACTGTGTAAAT AGCCTAATCAACGAAGAAATTGTGAACACCTATTTGTCTTACATATGCCCCCTCATGGTT TTTATATATTTTAACTTTATCGAAACCAAGTACCTCTTCTTCACAAAGATTGTTAACTTT ATATTGGCGCGCATTCTCGGAATTGAGATTTCGCACGTTACGATTGGAGTTAACGCGTTT CCAACGTTGTATGCTTACCTCAGAAATGTGTAG
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  • Fasta :-

    MDPKNNMFFCSNTLMEHRRVASNFLSMSREKSYAYERHQDGVSFILSLFPLLIISGVHLW IKTNGYYIGNLFLMITYFFSFFFFILYYYNSYAVFVLFVFFSFFISLCLHEFAHALVAYK YGDITMVYKGYLYLDIVNYLDIFHTLIIPCIMLLTTGFGLPGNLYWLQLHFIRSRFQLSF IYLSGPISDILCILVIVFFYNFYAYFKNNKNLSVQPNSILFISLATAASFLVDSFLLNIC PIFGFDGWGILEPYLPYCVNSLINEEIVNTYLSYICPLMVFIYFNFIETKYLFFTKIVNF ILARILGIEISHVTIGVNAFPTLYAYLRNV

    No Results
  • title: active site
  • coordinates: H110,E111,H114,N238,D246
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India