PcyM_1407900 | 26S protease regulatory subunit 10B, putative

_IDPredictionOTHERSPmTPCS_Position
PcyM_1407900OTHER0.9999770.0000080.000015
No Results

  • Fasta :-

    >PcyM_1407900 MDNKESIKLYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLK QLEDEKFIVKASSGPRYVVGCKSKIDKSKLAIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNPFLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIR SMRDYVIEEDFYKAARKINEAKKLEGKIEYEKI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1407900.fa Sequence name : PcyM_1407900 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.424 CoefTot : 0.000 ChDiff : 7 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.588 1.194 -0.031 0.412 MesoH : -0.634 0.442 -0.354 0.203 MuHd_075 : 40.449 22.614 12.776 8.933 MuHd_095 : 19.584 15.491 8.116 3.498 MuHd_100 : 19.086 14.618 6.377 2.855 MuHd_105 : 20.640 12.902 4.788 3.017 Hmax_075 : 3.500 11.200 -0.440 4.387 Hmax_095 : -5.075 8.100 -1.626 1.980 Hmax_100 : -11.000 5.500 -4.349 0.220 Hmax_105 : -9.000 6.125 -4.568 1.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9421 0.0579 DFMC : 0.9345 0.0655
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 PcyM_1407900 MDNKESIKLYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLKQLEDEKFIVKASSGPRYVVG 80 CKSKIDKSKLAIGTRVSLDMTTLTVMKRLPCEVDPLVFNMISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNP 160 FLFKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID 240 AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIH 320 ANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIRSMRDYVIEEDFYKAARKINEAKKLEGKIEYEKI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1407900 4 ---MDNK|ES 0.056 . PcyM_1407900 8 DNKESIK|LY 0.060 . PcyM_1407900 12 SIKLYVK|KV 0.067 . PcyM_1407900 13 IKLYVKK|VI 0.132 . PcyM_1407900 18 KKVIEHR|EI 0.113 . PcyM_1407900 25 EIESQVK|NL 0.058 . PcyM_1407900 28 SQVKNLR|LD 0.083 . PcyM_1407900 32 NLRLDIK|EQ 0.066 . PcyM_1407900 36 DIKEQNK|IY 0.070 . PcyM_1407900 40 QNKIYEK|TE 0.054 . PcyM_1407900 46 KTEDNLK|AL 0.060 . PcyM_1407900 60 IIGQVLK|QL 0.073 . PcyM_1407900 66 KQLEDEK|FI 0.062 . PcyM_1407900 70 DEKFIVK|AS 0.059 . PcyM_1407900 76 KASSGPR|YV 0.132 . PcyM_1407900 82 RYVVGCK|SK 0.070 . PcyM_1407900 84 VVGCKSK|ID 0.063 . PcyM_1407900 87 CKSKIDK|SK 0.108 . PcyM_1407900 89 SKIDKSK|LA 0.087 . PcyM_1407900 95 KLAIGTR|VS 0.076 . PcyM_1407900 107 TTLTVMK|RL 0.057 . PcyM_1407900 108 TLTVMKR|LP 0.146 . PcyM_1407900 126 MISDIDK|SE 0.081 . PcyM_1407900 131 DKSENSK|NK 0.059 . PcyM_1407900 133 SENSKNK|VN 0.078 . PcyM_1407900 147 GLSEQIR|QM 0.125 . PcyM_1407900 150 EQIRQMR|EV 0.279 . PcyM_1407900 164 LNPFLFK|RV 0.083 . PcyM_1407900 165 NPFLFKR|VG 0.164 . PcyM_1407900 169 FKRVGIK|TP 0.063 . PcyM_1407900 172 VGIKTPK|GV 0.074 . PcyM_1407900 184 GPPGTGK|TL 0.060 . PcyM_1407900 189 GKTLLAR|AM 0.083 . PcyM_1407900 201 INCNFMR|IV 0.138 . PcyM_1407900 210 VSAIVDK|YI 0.092 . PcyM_1407900 217 YIGESAR|II 0.113 . PcyM_1407900 220 ESARIIR|EM 0.257 . PcyM_1407900 227 EMFTYAK|EH 0.060 . PcyM_1407900 245 IDAIGGR|RF 0.101 . PcyM_1407900 246 DAIGGRR|FS 0.106 . PcyM_1407900 255 QGTSADR|EI 0.077 . PcyM_1407900 259 ADREIQR|TL 0.105 . PcyM_1407900 278 EELGNVK|II 0.056 . PcyM_1407900 285 IIMATNR|PD 0.073 . PcyM_1407900 295 LDPALIR|PG 0.069 . PcyM_1407900 298 ALIRPGR|LD 0.244 . PcyM_1407900 301 RPGRLDR|KI 0.344 . PcyM_1407900 302 PGRLDRK|IE 0.071 . PcyM_1407900 313 LPNETAR|IE 0.114 . PcyM_1407900 318 ARIEILK|IH 0.062 . PcyM_1407900 323 LKIHANK|MT 0.069 . PcyM_1407900 326 HANKMTK|LG 0.065 . PcyM_1407900 337 DYESVCR|LC 0.071 . PcyM_1407900 348 FNGADLR|NV 0.133 . PcyM_1407900 360 AGMFAIR|SM 0.126 . PcyM_1407900 363 FAIRSMR|DY 0.380 . PcyM_1407900 373 IEEDFYK|AA 0.076 . PcyM_1407900 376 DFYKAAR|KI 0.093 . PcyM_1407900 377 FYKAARK|IN 0.084 . PcyM_1407900 382 RKINEAK|KL 0.086 . PcyM_1407900 383 KINEAKK|LE 0.136 . PcyM_1407900 387 AKKLEGK|IE 0.061 . PcyM_1407900 392 GKIEYEK|I- 0.061 . ____________________________^_________________

  • Fasta :-

    >PcyM_1407900 ATGGATAACAAAGAAAGCATCAAACTGTACGTAAAGAAAGTGATAGAGCACAGGGAAATC GAAAGCCAAGTAAAGAATCTCAGATTAGATATAAAAGAGCAAAATAAAATATATGAAAAG ACAGAAGATAACTTGAAGGCACTGCAAAGTGTAGGCCAAATAATAGGCCAAGTGCTAAAG CAGTTAGAAGATGAGAAATTTATTGTGAAGGCATCAAGTGGGCCTAGATATGTGGTAGGA TGTAAATCCAAAATAGATAAATCGAAATTAGCCATAGGCACGAGGGTGTCATTAGACATG ACTACACTGACAGTTATGAAAAGATTGCCATGTGAAGTAGACCCATTAGTATTTAACATG ATTAGTGATATAGATAAAAGTGAAAATAGCAAAAATAAAGTGAACTACAATCAAATAGGA GGATTAAGTGAACAAATAAGACAAATGAGGGAAGTGGTGGAGTTACCAATACTTAACCCC TTTTTATTTAAGAGGGTAGGAATTAAAACACCTAAAGGGGTGCTACTGTACGGTCCACCA GGTACAGGGAAAACCCTACTAGCCAGGGCTATGGCGTCAAACATTAATTGTAATTTTATG AGAATAGTAGTCTCAGCTATTGTAGATAAGTATATCGGTGAAAGTGCAAGAATTATTAGA GAAATGTTCACCTATGCAAAAGAACACCAACCGTGTATCATTTTTATGGACGAAATTGAT GCCATAGGAGGTAGAAGATTTTCTCAGGGTACCTCCGCAGACAGAGAAATTCAAAGAACG CTCATGGAGTTATTAAATCATTTAGACGGTTTTGAAGAATTAGGAAATGTCAAAATTATT ATGGCTACCAACAGACCAGATGTACTAGACCCAGCGTTAATTAGACCTGGTAGATTAGAT AGAAAAATTGAAATTCCTCTACCGAACGAGACTGCCAGAATTGAAATTTTAAAAATTCAT GCCAATAAAATGACCAAACTGGGGGATATAGACTACGAATCGGTTTGTAGATTGTGTGAC GGCTTCAATGGAGCTGACCTTAGAAATGTCTGTACAGAAGCAGGCATGTTTGCGATCCGG TCTATGCGCGATTACGTCATTGAGGAGGATTTTTACAAGGCTGCTCGAAAGATTAATGAG GCCAAGAAGTTGGAGGGTAAAATAGAGTACGAAAAGATTTAG
  • Download Fasta

  • Fasta :-

    MDNKESIKLYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLK QLEDEKFIVKASSGPRYVVGCKSKIDKSKLAIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNPFLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIR SMRDYVIEEDFYKAARKINEAKKLEGKIEYEKI

  • title: ATP binding site
  • coordinates: P179,P180,G181,T182,G183,K184,T185,L186,D237,N284
No Results
No Results
IDSitePeptideScoreMethod
PcyM_1407900248 SGRRFSQGTS0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India