PcyM_1422200 | type I signal peptidase, putative

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_IDPredictionOTHERSPmTPCS_Position
PcyM_1422200OTHER0.9194840.0001480.080368
No Results

  • Fasta :-

    >PcyM_1422200 MNRSSHYVKRSYALNFLRKNILHTNRINHSSFSYHGNGKGEHILQKCYAKFGEERKRLQI VLCRSRNVCNFLLSSRSRSSPLRCYSEKKKRGNNKYKTKKRKKYFFNFVKINNPLNFIKK IILSFLLIFGINNYIIDMTLTSGSSMCPLINKNGVILFYVCDDTVRFIHQARTIFLYSCI NLLLRCYAVIGSNFEQAYMVILNNKIFSMVEKLKKKMTENKHVYRRGDVVLLTSPVNDKK RVCKRIIAIGNDKLFVDNINAFVHVPKDNIWIEGDNKMDSFDSRNYGFVHMDLIIGRVIF LLDPFINFRFINNKTS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1422200.fa Sequence name : PcyM_1422200 Sequence length : 316 VALUES OF COMPUTED PARAMETERS Coef20 : 4.394 CoefTot : -1.601 ChDiff : 34 ZoneTo : 40 KR : 7 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.106 1.976 0.283 0.718 MesoH : 0.172 0.964 -0.084 0.365 MuHd_075 : 40.105 27.054 12.487 9.634 MuHd_095 : 39.819 17.003 8.843 8.166 MuHd_100 : 33.006 18.603 9.112 7.276 MuHd_105 : 32.682 22.048 10.339 7.095 Hmax_075 : 16.683 14.787 3.476 4.713 Hmax_095 : 5.400 7.437 -1.161 2.835 Hmax_100 : 4.600 6.900 -1.227 3.090 Hmax_105 : 9.800 14.467 1.384 4.865 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0359 0.9641 DFMC : 0.1288 0.8712 This protein is probably imported in mitochondria. f(Ser) = 0.1500 f(Arg) = 0.1000 CMi = 0.71429 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 316 PcyM_1422200 MNRSSHYVKRSYALNFLRKNILHTNRINHSSFSYHGNGKGEHILQKCYAKFGEERKRLQIVLCRSRNVCNFLLSSRSRSS 80 PLRCYSEKKKRGNNKYKTKKRKKYFFNFVKINNPLNFIKKIILSFLLIFGINNYIIDMTLTSGSSMCPLINKNGVILFYV 160 CDDTVRFIHQARTIFLYSCINLLLRCYAVIGSNFEQAYMVILNNKIFSMVEKLKKKMTENKHVYRRGDVVLLTSPVNDKK 240 RVCKRIIAIGNDKLFVDNINAFVHVPKDNIWIEGDNKMDSFDSRNYGFVHMDLIIGRVIFLLDPFINFRFINNKTS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1422200 3 ----MNR|SS 0.154 . PcyM_1422200 9 RSSHYVK|RS 0.075 . PcyM_1422200 10 SSHYVKR|SY 0.396 . PcyM_1422200 18 YALNFLR|KN 0.072 . PcyM_1422200 19 ALNFLRK|NI 0.083 . PcyM_1422200 26 NILHTNR|IN 0.087 . PcyM_1422200 39 SYHGNGK|GE 0.072 . PcyM_1422200 46 GEHILQK|CY 0.069 . PcyM_1422200 50 LQKCYAK|FG 0.068 . PcyM_1422200 55 AKFGEER|KR 0.077 . PcyM_1422200 56 KFGEERK|RL 0.079 . PcyM_1422200 57 FGEERKR|LQ 0.120 . PcyM_1422200 64 LQIVLCR|SR 0.095 . PcyM_1422200 66 IVLCRSR|NV 0.094 . PcyM_1422200 76 NFLLSSR|SR 0.090 . PcyM_1422200 78 LLSSRSR|SS 0.110 . PcyM_1422200 83 SRSSPLR|CY 0.136 . PcyM_1422200 88 LRCYSEK|KK 0.071 . PcyM_1422200 89 RCYSEKK|KR 0.088 . PcyM_1422200 90 CYSEKKK|RG 0.103 . PcyM_1422200 91 YSEKKKR|GN 0.238 . PcyM_1422200 95 KKRGNNK|YK 0.085 . PcyM_1422200 97 RGNNKYK|TK 0.076 . PcyM_1422200 99 NNKYKTK|KR 0.071 . PcyM_1422200 100 NKYKTKK|RK 0.088 . PcyM_1422200 101 KYKTKKR|KK 0.151 . PcyM_1422200 102 YKTKKRK|KY 0.093 . PcyM_1422200 103 KTKKRKK|YF 0.111 . PcyM_1422200 110 YFFNFVK|IN 0.060 . PcyM_1422200 119 NPLNFIK|KI 0.066 . PcyM_1422200 120 PLNFIKK|II 0.103 . PcyM_1422200 152 MCPLINK|NG 0.052 . PcyM_1422200 166 VCDDTVR|FI 0.113 . PcyM_1422200 172 RFIHQAR|TI 0.088 . PcyM_1422200 185 CINLLLR|CY 0.084 . PcyM_1422200 205 MVILNNK|IF 0.070 . PcyM_1422200 212 IFSMVEK|LK 0.070 . PcyM_1422200 214 SMVEKLK|KK 0.070 . PcyM_1422200 215 MVEKLKK|KM 0.087 . PcyM_1422200 216 VEKLKKK|MT 0.112 . PcyM_1422200 221 KKMTENK|HV 0.092 . PcyM_1422200 225 ENKHVYR|RG 0.107 . PcyM_1422200 226 NKHVYRR|GD 0.179 . PcyM_1422200 239 TSPVNDK|KR 0.055 . PcyM_1422200 240 SPVNDKK|RV 0.141 . PcyM_1422200 241 PVNDKKR|VC 0.207 . PcyM_1422200 244 DKKRVCK|RI 0.207 . PcyM_1422200 245 KKRVCKR|II 0.282 . PcyM_1422200 253 IAIGNDK|LF 0.059 . PcyM_1422200 267 AFVHVPK|DN 0.095 . PcyM_1422200 277 WIEGDNK|MD 0.056 . PcyM_1422200 284 MDSFDSR|NY 0.145 . PcyM_1422200 297 MDLIIGR|VI 0.076 . PcyM_1422200 309 DPFINFR|FI 0.101 . PcyM_1422200 314 FRFINNK|TS 0.067 . ____________________________^_________________

  • Fasta :-

    >PcyM_1422200 ATGAACAGAAGTAGCCATTACGTCAAAAGATCATATGCACTAAATTTTTTACGGAAAAAT ATTTTACACACGAATAGGATTAATCATAGTTCGTTTAGCTACCATGGGAACGGCAAGGGA GAGCATATACTCCAGAAATGTTATGCCAAGTTTGGGGAGGAAAGAAAAAGGCTGCAAATT GTACTGTGTAGAAGTAGGAACGTTTGCAACTTTCTGTTGTCTTCAAGGAGTAGGAGCTCT CCATTGAGGTGCTACTCTGAGAAGAAGAAAAGAGGTAACAATAAATACAAAACGAAAAAA AGAAAAAAATATTTTTTCAATTTTGTAAAAATTAATAACCCTTTGAATTTTATAAAAAAA ATAATATTATCCTTTTTACTTATTTTTGGAATAAATAATTATATTATCGATATGACGCTG ACGAGTGGATCGAGTATGTGTCCATTAATAAATAAAAACGGAGTCATATTATTCTATGTG TGTGATGACACTGTAAGATTTATTCACCAAGCGCGCACCATTTTTCTGTACAGCTGTATA AACCTACTGCTTCGTTGTTACGCTGTAATTGGGTCAAACTTTGAGCAAGCCTATATGGTC ATTTTAAATAATAAAATTTTTAGCATGGTAGAAAAGTTAAAAAAAAAAATGACAGAAAAT AAACATGTTTACAGAAGAGGCGATGTCGTATTGTTAACTTCTCCTGTGAATGACAAAAAA AGAGTGTGTAAAAGGATTATTGCCATAGGGAATGATAAATTATTCGTTGATAATATAAAC GCCTTTGTCCACGTTCCTAAGGATAACATATGGATAGAAGGGGACAACAAAATGGATTCT TTTGACAGTCGAAATTACGGATTTGTTCATATGGATTTAATAATTGGCAGAGTCATTTTC TTGCTCGATCCGTTTATCAACTTTCGTTTTATTAATAACAAAACGAGTTGA
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  • Fasta :-

    MNRSSHYVKRSYALNFLRKNILHTNRINHSSFSYHGNGKGEHILQKCYAKFGEERKRLQI VLCRSRNVCNFLLSSRSRSSPLRCYSEKKKRGNNKYKTKKRKKYFFNFVKINNPLNFIKK IILSFLLIFGINNYIIDMTLTSGSSMCPLINKNGVILFYVCDDTVRFIHQARTIFLYSCI NLLLRCYAVIGSNFEQAYMVILNNKIFSMVEKLKKKMTENKHVYRRGDVVLLTSPVNDKK RVCKRIIAIGNDKLFVDNINAFVHVPKDNIWIEGDNKMDSFDSRNYGFVHMDLIIGRVIF LLDPFINFRFINNKTS

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PcyM_142220080 SRSRSSPLRC0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India