PcyM_1429400 | GTPase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005525      

  • Computed_GO_Functions:  GTP binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1429400SP0.1173350.8751080.007557CS pos: 25-26. LCC-FI. Pr: 0.4827
No Results

  • Fasta :-

    >PcyM_1429400 MRSVVKSPFSLFFWVFCVNVTRLCCFIPKRDTTKLVMFSNFRLFEDIKKKEDLEYKPFKN ISFNKLKTNLKNFLVINKKFNISDVKQVSFLGKFYNYEKIENYGVNEICILGRSNVGKST FLRNFIKYLINVNEHATVKVSKNSGCTRSINLYSFENGKKKRLFILTDMPGFGYAAGIGK KKMEFLRKNLEDYIFLRNQICLFFVLIDMSVDIQKIDVSIVDAIKKTNIPFRVICTKSDK FSTNAEERLQAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDTP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1429400.fa Sequence name : PcyM_1429400 Sequence length : 289 VALUES OF COMPUTED PARAMETERS Coef20 : 4.843 CoefTot : 0.125 ChDiff : 22 ZoneTo : 44 KR : 7 DE : 1 CleavSite : 32 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.371 1.988 0.342 0.625 MesoH : -1.093 0.425 -0.476 0.190 MuHd_075 : 31.243 15.164 6.232 7.200 MuHd_095 : 36.166 19.791 11.331 7.982 MuHd_100 : 32.279 17.959 10.349 6.633 MuHd_105 : 27.502 15.742 9.189 5.869 Hmax_075 : 15.050 12.000 2.236 5.145 Hmax_095 : 12.425 12.425 5.522 3.640 Hmax_100 : 19.900 23.400 6.781 7.490 Hmax_105 : 22.867 14.900 7.413 8.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1459 0.8541 DFMC : 0.2664 0.7336 This protein is probably imported in mitochondria. f(Ser) = 0.0909 f(Arg) = 0.0909 CMi = 0.46083 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 289 PcyM_1429400 MRSVVKSPFSLFFWVFCVNVTRLCCFIPKRDTTKLVMFSNFRLFEDIKKKEDLEYKPFKNISFNKLKTNLKNFLVINKKF 80 NISDVKQVSFLGKFYNYEKIENYGVNEICILGRSNVGKSTFLRNFIKYLINVNEHATVKVSKNSGCTRSINLYSFENGKK 160 KRLFILTDMPGFGYAAGIGKKKMEFLRKNLEDYIFLRNQICLFFVLIDMSVDIQKIDVSIVDAIKKTNIPFRVICTKSDK 240 FSTNAEERLQAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDTP 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1429400 2 -----MR|SV 0.282 . PcyM_1429400 6 -MRSVVK|SP 0.078 . PcyM_1429400 22 FCVNVTR|LC 0.073 . PcyM_1429400 29 LCCFIPK|RD 0.069 . PcyM_1429400 30 CCFIPKR|DT 0.224 . PcyM_1429400 34 PKRDTTK|LV 0.076 . PcyM_1429400 42 VMFSNFR|LF 0.079 . PcyM_1429400 48 RLFEDIK|KK 0.064 . PcyM_1429400 49 LFEDIKK|KE 0.074 . PcyM_1429400 50 FEDIKKK|ED 0.082 . PcyM_1429400 56 KEDLEYK|PF 0.058 . PcyM_1429400 59 LEYKPFK|NI 0.069 . PcyM_1429400 65 KNISFNK|LK 0.061 . PcyM_1429400 67 ISFNKLK|TN 0.064 . PcyM_1429400 71 KLKTNLK|NF 0.057 . PcyM_1429400 78 NFLVINK|KF 0.056 . PcyM_1429400 79 FLVINKK|FN 0.093 . PcyM_1429400 86 FNISDVK|QV 0.074 . PcyM_1429400 93 QVSFLGK|FY 0.075 . PcyM_1429400 99 KFYNYEK|IE 0.059 . PcyM_1429400 113 EICILGR|SN 0.104 . PcyM_1429400 118 GRSNVGK|ST 0.132 . PcyM_1429400 123 GKSTFLR|NF 0.128 . PcyM_1429400 127 FLRNFIK|YL 0.079 . PcyM_1429400 139 NEHATVK|VS 0.062 . PcyM_1429400 142 ATVKVSK|NS 0.070 . PcyM_1429400 148 KNSGCTR|SI 0.145 . PcyM_1429400 159 YSFENGK|KK 0.056 . PcyM_1429400 160 SFENGKK|KR 0.082 . PcyM_1429400 161 FENGKKK|RL 0.120 . PcyM_1429400 162 ENGKKKR|LF 0.160 . PcyM_1429400 180 YAAGIGK|KK 0.060 . PcyM_1429400 181 AAGIGKK|KM 0.085 . PcyM_1429400 182 AGIGKKK|ME 0.083 . PcyM_1429400 187 KKMEFLR|KN 0.076 . PcyM_1429400 188 KMEFLRK|NL 0.105 . PcyM_1429400 197 EDYIFLR|NQ 0.079 . PcyM_1429400 215 MSVDIQK|ID 0.062 . PcyM_1429400 225 SIVDAIK|KT 0.059 . PcyM_1429400 226 IVDAIKK|TN 0.082 . PcyM_1429400 232 KTNIPFR|VI 0.125 . PcyM_1429400 237 FRVICTK|SD 0.081 . PcyM_1429400 240 ICTKSDK|FS 0.070 . PcyM_1429400 248 STNAEER|LQ 0.083 . PcyM_1429400 253 ERLQAIK|NF 0.065 . PcyM_1429400 260 NFYQLEK|IP 0.060 . PcyM_1429400 267 IPIHISK|FS 0.078 . PcyM_1429400 278 NYINIFK|EI 0.060 . ____________________________^_________________

  • Fasta :-

    >PcyM_1429400 ATGCGAAGCGTAGTTAAATCACCCTTCTCCCTTTTTTTTTGGGTGTTCTGCGTTAATGTG ACTCGTCTGTGTTGTTTCATTCCAAAAAGGGATACCACCAAACTTGTGATGTTCTCAAAT TTCCGTCTTTTTGAAGACATTAAAAAGAAGGAAGATCTCGAATATAAGCCGTTCAAAAAT ATCAGCTTTAATAAGCTTAAGACCAATTTGAAAAACTTTCTTGTAATCAACAAAAAGTTT AACATATCGGATGTTAAGCAGGTTTCCTTTTTAGGAAAGTTTTACAATTACGAGAAAATT GAGAATTACGGCGTAAATGAAATATGCATACTGGGCCGGAGCAACGTAGGGAAGTCAACC TTTCTGAGGAACTTCATAAAATACCTTATCAACGTGAATGAGCATGCAACTGTAAAAGTT TCCAAGAATAGCGGGTGCACTAGGTCGATAAATTTATACTCTTTTGAAAATGGCAAGAAA AAGAGGTTATTCATTTTGACGGACATGCCTGGCTTTGGCTATGCTGCAGGAATAGGCAAA AAGAAGATGGAGTTCTTGAGAAAGAACCTAGAGGACTACATATTTCTGCGAAATCAAATA TGCCTTTTTTTTGTTCTTATCGACATGAGCGTGGACATACAGAAGATTGACGTGTCCATA GTGGACGCCATAAAAAAAACGAACATACCCTTCAGAGTCATCTGCACAAAGAGCGACAAG TTCAGCACCAATGCTGAGGAACGCCTTCAAGCAATCAAAAATTTTTATCAGCTTGAAAAA ATCCCCATACACATTTCGAAATTTTCGACACACAATTACATAAACATTTTCAAAGAAATT CAGCACCACTGCAATTTGGACACCCCGTGA
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  • Fasta :-

    MRSVVKSPFSLFFWVFCVNVTRLCCFIPKRDTTKLVMFSNFRLFEDIKKKEDLEYKPFKN ISFNKLKTNLKNFLVINKKFNISDVKQVSFLGKFYNYEKIENYGVNEICILGRSNVGKST FLRNFIKYLINVNEHATVKVSKNSGCTRSINLYSFENGKKKRLFILTDMPGFGYAAGIGK KKMEFLRKNLEDYIFLRNQICLFFVLIDMSVDIQKIDVSIVDAIKKTNIPFRVICTKSDK FSTNAEERLQAIKNFYQLEKIPIHISKFSTHNYINIFKEIQHHCNLDTP

  • title: GTP/Mg2+ binding site
  • coordinates: S114,N115,V116,G117,K118,S119,T120,G171,T236,K237,D239,S269,T270,H271
No Results
No Results
IDSitePeptideScoreMethod
PcyM_142940032 TPKRDTTKLV0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India