PcyM_1438200 | PPPDE peptidase domain-containing protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PcyM_1438200OTHER0.9930280.0053170.001655
No Results

  • Fasta :-

    >PcyM_1438200 MSSFNVKLKIYDLSRGMVKLWSPFLIGKQINGVWHTAVWVYDMEYFYGGGIMCLAPTEFE SYYDLQPVNIVDMGITELQQSHFHEYLNGIQPDFTVDKYNLVNWNCNNFTNEVCNFLVGK NIPQYILDTPKEVMSTTKGKLILDMMQSYQTNIAPGFEASAPVLNNGRNEDSRGANIRAG CSKEAEVKELTKVPSVSLDNFFNENKIENLLDEYIKNEKYDVDEKKDFLNFLKNILDNVS TNPDVLKNRYVHVKNFPKFQSKHGNSEYNKILSSLNFFQGYIENDEVNNLKKFTIFVDPK YNKMHAFTEHLDLFLNKNIFLKNPDKTIYKMETLKFKDMCEYAAYCNKKKSNSNDVLIFI SEAFLTNNFDVTNEENDINHFNKVKAGICGDPQVEREFLCSTSDLLEERINELDSSE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PcyM_1438200.fa Sequence name : PcyM_1438200 Sequence length : 417 VALUES OF COMPUTED PARAMETERS Coef20 : 4.225 CoefTot : -1.457 ChDiff : -14 ZoneTo : 41 KR : 5 DE : 1 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.582 1.118 -0.045 0.521 MesoH : -0.313 0.231 -0.381 0.299 MuHd_075 : 29.428 14.565 8.298 6.381 MuHd_095 : 38.100 23.386 8.331 7.751 MuHd_100 : 40.371 21.955 9.049 8.254 MuHd_105 : 43.007 21.417 9.982 8.577 Hmax_075 : 17.850 17.850 2.907 7.338 Hmax_095 : 20.500 19.700 2.528 7.350 Hmax_100 : 18.300 15.500 1.884 6.070 Hmax_105 : 19.133 18.667 3.105 6.487 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2052 0.7948 DFMC : 0.4360 0.5640 This protein is probably imported in mitochondria. f(Ser) = 0.0976 f(Arg) = 0.0244 CMi = 0.93677 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 417 PcyM_1438200 MSSFNVKLKIYDLSRGMVKLWSPFLIGKQINGVWHTAVWVYDMEYFYGGGIMCLAPTEFESYYDLQPVNIVDMGITELQQ 80 SHFHEYLNGIQPDFTVDKYNLVNWNCNNFTNEVCNFLVGKNIPQYILDTPKEVMSTTKGKLILDMMQSYQTNIAPGFEAS 160 APVLNNGRNEDSRGANIRAGCSKEAEVKELTKVPSVSLDNFFNENKIENLLDEYIKNEKYDVDEKKDFLNFLKNILDNVS 240 TNPDVLKNRYVHVKNFPKFQSKHGNSEYNKILSSLNFFQGYIENDEVNNLKKFTIFVDPKYNKMHAFTEHLDLFLNKNIF 320 LKNPDKTIYKMETLKFKDMCEYAAYCNKKKSNSNDVLIFISEAFLTNNFDVTNEENDINHFNKVKAGICGDPQVEREFLC 400 STSDLLEERINELDSSE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PcyM_1438200 7 MSSFNVK|LK 0.066 . PcyM_1438200 9 SFNVKLK|IY 0.084 . PcyM_1438200 15 KIYDLSR|GM 0.074 . PcyM_1438200 19 LSRGMVK|LW 0.073 . PcyM_1438200 28 SPFLIGK|QI 0.080 . PcyM_1438200 98 PDFTVDK|YN 0.062 . PcyM_1438200 120 CNFLVGK|NI 0.071 . PcyM_1438200 131 YILDTPK|EV 0.068 . PcyM_1438200 138 EVMSTTK|GK 0.064 . PcyM_1438200 140 MSTTKGK|LI 0.079 . PcyM_1438200 168 PVLNNGR|NE 0.067 . PcyM_1438200 173 GRNEDSR|GA 0.130 . PcyM_1438200 178 SRGANIR|AG 0.143 . PcyM_1438200 183 IRAGCSK|EA 0.107 . PcyM_1438200 188 SKEAEVK|EL 0.070 . PcyM_1438200 192 EVKELTK|VP 0.064 . PcyM_1438200 206 NFFNENK|IE 0.053 . PcyM_1438200 216 LLDEYIK|NE 0.055 . PcyM_1438200 219 EYIKNEK|YD 0.059 . PcyM_1438200 225 KYDVDEK|KD 0.052 . PcyM_1438200 226 YDVDEKK|DF 0.125 . PcyM_1438200 233 DFLNFLK|NI 0.062 . PcyM_1438200 247 TNPDVLK|NR 0.065 . PcyM_1438200 249 PDVLKNR|YV 0.144 . PcyM_1438200 254 NRYVHVK|NF 0.074 . PcyM_1438200 258 HVKNFPK|FQ 0.085 . PcyM_1438200 262 FPKFQSK|HG 0.067 . PcyM_1438200 270 GNSEYNK|IL 0.074 . PcyM_1438200 291 DEVNNLK|KF 0.058 . PcyM_1438200 292 EVNNLKK|FT 0.120 . PcyM_1438200 300 TIFVDPK|YN 0.069 . PcyM_1438200 303 VDPKYNK|MH 0.058 . PcyM_1438200 317 LDLFLNK|NI 0.066 . PcyM_1438200 322 NKNIFLK|NP 0.066 . PcyM_1438200 326 FLKNPDK|TI 0.070 . PcyM_1438200 330 PDKTIYK|ME 0.060 . PcyM_1438200 335 YKMETLK|FK 0.071 . PcyM_1438200 337 METLKFK|DM 0.070 . PcyM_1438200 348 YAAYCNK|KK 0.065 . PcyM_1438200 349 AAYCNKK|KS 0.091 . PcyM_1438200 350 AYCNKKK|SN 0.153 . PcyM_1438200 383 DINHFNK|VK 0.070 . PcyM_1438200 385 NHFNKVK|AG 0.071 . PcyM_1438200 396 GDPQVER|EF 0.077 . PcyM_1438200 409 SDLLEER|IN 0.070 . ____________________________^_________________

  • Fasta :-

    >PcyM_1438200 ATGTCATCCTTCAATGTCAAGCTGAAGATATACGATTTGTCCAGGGGAATGGTAAAATTG TGGTCCCCCTTTTTGATTGGAAAACAAATAAATGGCGTGTGGCACACTGCCGTCTGGGTC TATGACATGGAGTACTTCTACGGTGGAGGAATCATGTGCCTGGCTCCAACCGAATTCGAG TCTTACTACGACCTACAGCCTGTGAACATCGTTGATATGGGAATAACCGAACTGCAACAA TCGCACTTTCACGAATACCTAAACGGCATTCAGCCAGATTTTACAGTAGACAAATACAAC TTAGTTAACTGGAATTGTAACAATTTTACAAACGAAGTATGCAATTTTTTGGTTGGGAAA AATATTCCTCAATACATTTTAGACACCCCGAAGGAGGTCATGTCTACGACTAAGGGGAAA TTAATTTTAGACATGATGCAATCGTATCAAACTAACATCGCCCCTGGGTTTGAAGCGAGC GCACCTGTATTAAACAATGGACGTAATGAGGACAGTAGAGGCGCAAATATCAGAGCGGGA TGTAGCAAGGAAGCGGAAGTTAAGGAGCTCACGAAAGTTCCAAGTGTTTCATTAGATAAT TTTTTTAACGAAAATAAAATAGAGAATTTATTGGACGAATATATAAAGAATGAAAAATAT GATGTAGATGAAAAAAAAGATTTTTTAAATTTTCTGAAAAACATTTTAGATAACGTAAGC ACAAATCCAGATGTTTTAAAAAACCGTTATGTGCATGTTAAAAATTTCCCCAAGTTTCAG AGCAAACACGGAAATAGTGAATATAATAAGATTTTATCGTCCTTGAATTTTTTCCAAGGA TATATAGAAAATGATGAAGTAAATAATTTGAAAAAGTTTACCATTTTTGTGGATCCCAAG TATAATAAAATGCACGCCTTTACAGAACATTTAGATTTATTTTTAAACAAAAATATTTTT CTAAAGAATCCAGATAAAACCATTTACAAAATGGAAACTTTGAAATTTAAGGACATGTGT GAATATGCTGCTTATTGCAATAAAAAGAAAAGCAACTCAAATGATGTGCTTATTTTTATT TCTGAAGCTTTTTTAACCAATAATTTTGATGTCACCAATGAGGAAAATGACATTAACCAT TTCAACAAGGTGAAAGCTGGGATATGTGGTGACCCGCAGGTGGAAAGGGAATTCTTGTGC AGCACGTCGGACCTTCTGGAAGAACGCATAAATGAGTTAGACTCATCCGAGTGA
  • Download Fasta

  • Fasta :-

    MSSFNVKLKIYDLSRGMVKLWSPFLIGKQINGVWHTAVWVYDMEYFYGGGIMCLAPTEFE SYYDLQPVNIVDMGITELQQSHFHEYLNGIQPDFTVDKYNLVNWNCNNFTNEVCNFLVGK NIPQYILDTPKEVMSTTKGKLILDMMQSYQTNIAPGFEASAPVLNNGRNEDSRGANIRAG CSKEAEVKELTKVPSVSLDNFFNENKIENLLDEYIKNEKYDVDEKKDFLNFLKNILDNVS TNPDVLKNRYVHVKNFPKFQSKHGNSEYNKILSSLNFFQGYIENDEVNNLKKFTIFVDPK YNKMHAFTEHLDLFLNKNIFLKNPDKTIYKMETLKFKDMCEYAAYCNKKKSNSNDVLIFI SEAFLTNNFDVTNEENDINHFNKVKAGICGDPQVEREFLCSTSDLLEERINELDSSE

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethod
PcyM_1438200129 TYILDTPKEV0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India