SPAC13A11.04c | SAGA complex ubiquitin C-terminal hydrolase Ubp8

_IDPredictionOTHERSPmTPCS_Position
SPAC13A11.04cOTHER0.9999100.0000710.000019
No Results

  • Fasta :-

    >SPAC13A11.04c MPGDVEGCQHLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCL WGHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYVYQTELETLRFKIKNIKAWQSDHKRLP EKYNQMVCLEAYRKYPPVCATAGLRGIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTS TDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVY LLDQMHTESGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTL QGCLERFVSKEKVQYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQV SYPAFLRMRYNFNQDDVDYQLYSVVCHKGTLDTGHYIAYTYYQNQWFLLDDTTIVEVKES EVLNSQAYLLFYHERQILYSDEMTVKTEN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/545 Sequence name : 545 Sequence length : 449 VALUES OF COMPUTED PARAMETERS Coef20 : 2.525 CoefTot : -0.503 ChDiff : 4 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.288 0.102 0.477 MesoH : -0.136 0.375 -0.209 0.185 MuHd_075 : 8.409 1.778 2.580 1.724 MuHd_095 : 12.737 9.216 6.058 1.425 MuHd_100 : 16.637 12.782 6.361 2.102 MuHd_105 : 16.457 13.540 5.788 2.235 Hmax_075 : -3.033 2.300 -1.829 2.123 Hmax_095 : 0.000 4.600 0.716 2.670 Hmax_100 : 2.400 6.900 0.692 2.830 Hmax_105 : -5.300 4.600 -1.853 1.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9992 0.0008 DFMC : 0.9968 0.0032
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 449 SPAC13A11.04c MPGDVEGCQHLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDV 80 KNGHTYCFGCQDYVYQTELETLRFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLGATCFMSVIL 160 QSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVY 240 LLDQMHTESGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEKVQYSCHSC 320 GSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNFNQDDVDYQLYSVVCHKGTLDTGHYIAYT 400 YYQNQWFLLDDTTIVEVKESEVLNSQAYLLFYHERQILYSDEMTVKTEN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC13A11.04c 12 EGCQHLK|LK 0.058 . SPAC13A11.04c 14 CQHLKLK|PA 0.086 . SPAC13A11.04c 23 DVENYQK|IC 0.063 . SPAC13A11.04c 36 SCHFVPR|RC 0.121 . SPAC13A11.04c 37 CHFVPRR|CS 0.140 . SPAC13A11.04c 42 RRCSTCK|RI 0.065 . SPAC13A11.04c 43 RCSTCKR|IN 0.229 . SPAC13A11.04c 46 TCKRINK|RS 0.115 . SPAC13A11.04c 47 CKRINKR|SI 0.327 . SPAC13A11.04c 50 INKRSIR|CL 0.322 . SPAC13A11.04c 81 MIGVDVK|NG 0.062 . SPAC13A11.04c 103 TELETLR|FK 0.088 . SPAC13A11.04c 105 LETLRFK|IK 0.059 . SPAC13A11.04c 107 TLRFKIK|NI 0.086 . SPAC13A11.04c 110 FKIKNIK|AW 0.061 . SPAC13A11.04c 117 AWQSDHK|RL 0.066 . SPAC13A11.04c 118 WQSDHKR|LP 0.250 . SPAC13A11.04c 122 HKRLPEK|YN 0.070 . SPAC13A11.04c 133 VCLEAYR|KY 0.072 . SPAC13A11.04c 134 CLEAYRK|YP 0.069 . SPAC13A11.04c 145 CATAGLR|GI 0.088 . SPAC13A11.04c 170 LHNPLVR|NL 0.103 . SPAC13A11.04c 184 HTSTDCK|RP 0.060 . SPAC13A11.04c 185 TSTDCKR|PT 0.149 . SPAC13A11.04c 204 SSIYNSK|NK 0.064 . SPAC13A11.04c 206 IYNSKNK|ST 0.112 . SPAC13A11.04c 221 VLNLMWK|LS 0.057 . SPAC13A11.04c 224 LMWKLSK|SL 0.077 . SPAC13A11.04c 263 CTCPIHR|IF 0.101 . SPAC13A11.04c 270 IFSGSLK|NV 0.088 . SPAC13A11.04c 279 VTCLDCK|KE 0.057 . SPAC13A11.04c 280 TCLDCKK|ER 0.081 . SPAC13A11.04c 282 LDCKKER|VA 0.111 . SPAC13A11.04c 306 LQGCLER|FV 0.205 . SPAC13A11.04c 310 LERFVSK|EK 0.068 . SPAC13A11.04c 312 RFVSKEK|VQ 0.056 . SPAC13A11.04c 323 CHSCGSK|NA 0.077 . SPAC13A11.04c 327 GSKNAIK|QL 0.058 . SPAC13A11.04c 333 KQLVFDK|LP 0.062 . SPAC13A11.04c 343 TICMQLK|RF 0.077 . SPAC13A11.04c 344 ICMQLKR|FE 0.225 . SPAC13A11.04c 355 NFAMSTK|ID 0.063 . SPAC13A11.04c 358 MSTKIDK|QV 0.070 . SPAC13A11.04c 367 SYPAFLR|MR 0.069 . SPAC13A11.04c 369 PAFLRMR|YN 0.092 . SPAC13A11.04c 388 YSVVCHK|GT 0.072 . SPAC13A11.04c 418 TTIVEVK|ES 0.067 . SPAC13A11.04c 435 LLFYHER|QI 0.105 . SPAC13A11.04c 446 SDEMTVK|TE 0.061 . ____________________________^_________________

  • Fasta :-

    >SPAC13A11.04c TATGGCTCTTAACGCTGTACACCGCATCCTTAATTGCCCAAATTTAAGCAAAGAGAAATA ATGTTCTTTTGCCAGAATAGCGAGTTCGTCTATTGTTGTCGTTTCACCCTGCATCGAAGC AGATGCTTTTTAGTCTGAAAGGCCAATTTTGTACGTATCAAGGATGCCTGGGGATGTAGA AGGTTGCCAGCATCTTAAACTTAAACCGGCGGATGTTGAAAACTATCAAAAGATCTGTAC CCAGATATTCAGTTGTCATTTTGTCCCACGTCGCTGCAGTACTTGCAAACGCATCAACAA GCGGAGTATTCGATGCTTGAGTTGTCATTCTGTGGGATGTCTTTGGGGACATCATGGTGA AGAACACGCAATGGAGCACACTCATATGATCGGCGTGGATGTAAAAAATGGCCATACCTA CTGCTTTGGCTGTCAAGACTACGTTTATCAGACCGAGTTGGAAACCCTTCGTTTTAAGAT CAAGAATATCAAGGCATGGCAAAGTGATCACAAGAGACTTCCCGAGAAGTACAATCAAAT GGTTTGCTTAGAAGCCTATCGAAAATACCCTCCAGTTTGCGCAACAGCAGGCTTGAGGGG GATCCAGAACTTGGGTGCTACTTGTTTCATGAGCGTCATTTTACAAAGTATTTTGCATAA TCCATTGGTTCGAAACTTGTTTTTCAGTGGGTTTCATACTTCTACTGATTGTAAGCGACC TACTTGCATGACTTGTGCCATTGACGATATGTTTTCATCTATTTATAATTCTAAAAACAA ATCTACTTTTTACGGTCCCACTGCTGTCTTAAATCTTATGTGGAAACTCAGCAAATCTTT ATGTGGTTACTCCCAGCAAGATGGCCACGAATTTTTTGTATACTTGCTGGACCAAATGCA TACGGAAAGCGGAGGAGGAACATCAATGCCGTGCACTTGTCCTATTCATCGTATTTTTAG TGGATCTCTGAAAAACGTTGTTACATGCCTAGATTGCAAGAAGGAGCGGGTGGCTGTGGA TCCTTTGATGGACATTAGTTTAGACATCAATGAGCCAACACTTCAAGGATGTTTGGAAAG GTTTGTTTCCAAAGAGAAAGTTCAATATAGCTGTCATAGTTGCGGGTCAAAAAATGCTAT TAAACAATTGGTCTTTGACAAACTACCTCCAACTATTTGCATGCAATTGAAACGATTTGA ACAAAATAACTTTGCCATGTCAACTAAAATAGATAAGCAAGTATCTTATCCAGCATTTTT AAGAATGCGCTACAACTTTAATCAAGATGATGTGGATTATCAATTATACTCAGTTGTGTG TCATAAAGGAACTCTCGACACAGGGCACTATATTGCCTATACATACTACCAAAATCAATG GTTTTTGCTGGATGACACCACAATTGTGGAAGTAAAGGAATCGGAGGTCTTAAATTCTCA AGCTTACCTATTATTTTACCATGAGCGTCAAATCCTATACAGTGATGAAATGACTGTTAA AACGGAAAATTGAGTTAGATTATGCGATCAGATATCCGTTCATGAACAATCATTATGAAC CATGTAAAGTAATTGACTCAAAGGTTCCTTATTTATGTGGTTATGAAACATCATCACTTC GATAATCTAACTCATGAAGAAGCTTTTAGATTTCATATTGTTGAGGCCAGAAATGGCATT GGATTTGGAACCGTTACAACAGTCGCATTTTAATTAATGACCTTACGTAAATTTATAAAA AAAGTTAAAACTATAAAAAAAGAAACATGCTTTTTTTCTTTCAAAGTTAACAAATACTAT AAGTTTGAGGAATTTGGACTTTTGTTTTGTTTCGTTTAATATTATTCCAACTAATTATAA TTTTATCTTTTAAAAGCTAA
  • Download Fasta

  • Fasta :-

    MPGDVEGCQHLKLKPADVENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCL WGHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYVYQTELETLRFKIKNIKAWQSDHKRLP EKYNQMVCLEAYRKYPPVCATAGLRGIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTS TDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVY LLDQMHTESGGGTSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTL QGCLERFVSKEKVQYSCHSCGSKNAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQV SYPAFLRMRYNFNQDDVDYQLYSVVCHKGTLDTGHYIAYTYYQNQWFLLDDTTIVEVKES EVLNSQAYLLFYHERQILYSDEMTVKTEN

    No Results
  • title: Active Site
  • coordinates: N149,C154,H395,D411
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SPAC13A11.04c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India