SPAC1687.17c | Der1-like (degradation in the ER) family (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPAC1687.17cOTHER0.9998260.0000290.000145
No Results

  • Fasta :-

    >SPAC1687.17c MAILPEFISQTPPVTRYIVLGTLFTTLAVNFGYVSDLKIFFNWKLFLAKGEYWRAITTFL YVGPFGLELILYLSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAAS YFSFTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLLDLISALIGHV YFFVTDFSTV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/516 Sequence name : 516 Sequence length : 190 VALUES OF COMPUTED PARAMETERS Coef20 : 4.039 CoefTot : -3.280 ChDiff : 5 ZoneTo : 187 KR : 13 DE : 8 CleavSite : 87 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 1.771 0.230 0.722 MesoH : 0.899 1.010 -0.065 0.482 MuHd_075 : 30.964 27.325 8.707 8.241 MuHd_095 : 38.501 26.747 9.655 9.860 MuHd_100 : 36.080 28.363 9.562 9.369 MuHd_105 : 39.727 28.176 9.752 9.335 Hmax_075 : 21.400 25.500 3.857 6.510 Hmax_095 : 18.300 23.800 4.663 7.691 Hmax_100 : 20.500 28.700 5.405 8.600 Hmax_105 : 21.350 24.150 4.222 7.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9751 0.0249 DFMC : 0.8690 0.1310
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 190 SPAC1687.17c MAILPEFISQTPPVTRYIVLGTLFTTLAVNFGYVSDLKIFFNWKLFLAKGEYWRAITTFLYVGPFGLELILYLSFLLRFM 80 SMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLR 160 WLRTGIFPLLDLISALIGHVYFFVTDFSTV 240 ................................................................................ 80 ................................................................................ 160 .............................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC1687.17c 16 QTPPVTR|YI 0.089 . SPAC1687.17c 38 GYVSDLK|IF 0.054 . SPAC1687.17c 44 KIFFNWK|LF 0.059 . SPAC1687.17c 49 WKLFLAK|GE 0.063 . SPAC1687.17c 54 AKGEYWR|AI 0.105 . SPAC1687.17c 78 YLSFLLR|FM 0.134 . SPAC1687.17c 85 FMSMLER|SS 0.127 . SPAC1687.17c 97 QTQSFLK|TV 0.081 . SPAC1687.17c 133 LYIWSWK|HP 0.056 . SPAC1687.17c 138 WKHPLYR|IS 0.120 . SPAC1687.17c 148 LGLFDVK|AP 0.054 . SPAC1687.17c 160 WVMVLLR|WL 0.105 . SPAC1687.17c 163 VLLRWLR|TG 0.110 . ____________________________^_________________

  • Fasta :-

    >SPAC1687.17c GAACTACTTAATAACTATAAGAAGGTTCGTAGTACATTGTTAACCGAGTACAACTTCTAC GAAAAGTACATCCTGGCTAAAATATATAAAAAATGGCAATTTTGCCAGAATTTATAAGCC AAACTCCTCCGGTTACGAGATACATCGTACTTGGAACCCTATTTACAACATTGGCAGTGA ATTTTGGTTATGTATCCGATCTTAAGATATTTTTTAATTGGAAACTGTTTTTAGCAAAAG GGGAGTACTGGAGGGCAATAACTACATTCCTTTATGTTGGGCCTTTTGGATTAGAGTTGA TTTTATATTTGTCGTTTCTACTTCGTTTCATGAGTATGTTAGAAAGATCTAGTCCGCCGC CTCAAACACAGAGCTTCTTAAAAACGGTATTGATAGTATGGTTTTCTCTTTTAGTTACCT CCTATTTTTCCTACATGCCATTTGCAGCTTCTTACTTTTCATTTACCATGTTATACATAT GGTCGTGGAAACATCCACTGTACAGAATCTCGATACTAGGTCTTTTCGACGTAAAAGCAC CTTATGTTCCATGGGTAATGGTATTATTGCGCTGGTTACGAACTGGGATCTTTCCACTGC TTGATTTAATTAGTGCTTTGATTGGACATGTATACTTCTTCGTTACAGATTTTTCTACAG TATGACGCCTGAAGAGAATAAGAAAAGAAAAAAAAGTAAATAAATACCACACTTGTTTTC TGATTGACTGCTGCCTATTGATTCCTTTTCTATCTTTACAAGTCGATTTCTATTGAGCTT GTGAAAGACTAGGGATGGCGAATAGTCACTGTCTTTTGTTTATCTAAAATGTTAGATGAA TGATTTCCCTAATCAAGGGCACGAATAATATTACGAAAATTTCAGGAATTCGCAGGCGTT TCCTGGTTTGCCAAGCCATTCGAGCTTTTCTTGTTATTTCTTAAAACTAAGTAATAAATG TTTTATCTCATTA
  • Download Fasta

  • Fasta :-

    MAILPEFISQTPPVTRYIVLGTLFTTLAVNFGYVSDLKIFFNWKLFLAKGEYWRAITTFL YVGPFGLELILYLSFLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAAS YFSFTMLYIWSWKHPLYRISILGLFDVKAPYVPWVMVLLRWLRTGIFPLLDLISALIGHV YFFVTDFSTV

    No Results
No Results
No Results
IDSitePeptideScoreMethod
SPAC1687.17c87 SLERSSPPPQ0.994unsp

SPAC1687.17c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India