SPAC19B12.06c | rhomboid family protease associated with COP1 coated vesicle (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPAC19B12.06cOTHER0.9999930.0000020.000006
No Results

  • Fasta :-

    >SPAC19B12.06c MAIELGERISTSVGFLAELFLMKIPLFTVIVALLTIILGIVNIFLPIVDFFGLSWHNLIN IRLHTLNTYPLVHHGVISFILGLLGIFLLMPRFERRYGTLCTIAMFFGFLEVIPAIAYLI ACYVAESDDVYVGIGGWVYSLLAMYLLNLFGDLHPKLLNLPQVVRMALALVAPVLGLPLD FSITIVLHLTAVVISIIFSFAYMDFFLPRGGFLVWVETKFSKIIDAIPNYISVTEAAYYQ ADGAIPIQDLGSNSSGIV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/84 Sequence name : 84 Sequence length : 258 VALUES OF COMPUTED PARAMETERS Coef20 : 4.144 CoefTot : 0.141 ChDiff : -6 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.376 2.959 0.531 0.951 MesoH : 1.137 1.598 0.048 0.637 MuHd_075 : 30.630 7.339 5.988 3.913 MuHd_095 : 28.310 20.406 7.957 5.792 MuHd_100 : 34.476 24.380 10.211 6.821 MuHd_105 : 33.667 23.916 10.365 6.861 Hmax_075 : 17.033 13.767 2.564 5.413 Hmax_095 : 16.537 18.725 3.297 6.178 Hmax_100 : 16.900 19.500 3.632 6.420 Hmax_105 : 17.033 21.467 4.332 7.117 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8483 0.1517 DFMC : 0.9087 0.0913
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 258 SPAC19B12.06c MAIELGERISTSVGFLAELFLMKIPLFTVIVALLTIILGIVNIFLPIVDFFGLSWHNLINIRLHTLNTYPLVHHGVISFI 80 LGLLGIFLLMPRFERRYGTLCTIAMFFGFLEVIPAIAYLIACYVAESDDVYVGIGGWVYSLLAMYLLNLFGDLHPKLLNL 160 PQVVRMALALVAPVLGLPLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGGFLVWVETKFSKIIDAIPNYISVTEAAYYQ 240 ADGAIPIQDLGSNSSGIV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC19B12.06c 8 AIELGER|IS 0.070 . SPAC19B12.06c 23 AELFLMK|IP 0.052 . SPAC19B12.06c 62 HNLINIR|LH 0.064 . SPAC19B12.06c 92 IFLLMPR|FE 0.072 . SPAC19B12.06c 95 LMPRFER|RY 0.208 . SPAC19B12.06c 96 MPRFERR|YG 0.152 . SPAC19B12.06c 156 FGDLHPK|LL 0.057 . SPAC19B12.06c 165 NLPQVVR|MA 0.084 . SPAC19B12.06c 209 MDFFLPR|GG 0.091 . SPAC19B12.06c 219 LVWVETK|FS 0.066 . SPAC19B12.06c 222 VETKFSK|II 0.074 . ____________________________^_________________

  • Fasta :-

    >SPAC19B12.06c CTCGATTGCGATTATTTGCAAAACTGTGATTAATTACTACCTTTATCTTTAGCAGATGGA AATTCTTAATAGTCATTGTATGTAAAATTATATAAAACTCAATATTTTCCCTTGAAAAAT AATTGGTTAGTCGAACTTGTATTGCGATTGACTTTCATATACACCTTGGCTGGTATAACC AGCGCTTACTTTACCTTGCTATAAACCAACAAAGTCAATATTCCTAAAACTTTTTTAAAA AGGGAATATTTTAGACGAATTATTACCGAGAGAAGGTAAAAGGTGTAACTTAATTAATAA ATAGCATGGCCATTGAACTAGGAGAACGTATTTCGACATCGGTCGGATTTTTAGCGGAAC TTTTCCTTATGAAAATTCCACTCTTCACTGTGATTGTTGCCCTGTTAACTATCATTCTTG GAATCGTAAACATTTTCTTGCCTATCGTTGACTTTTTTGGCCTAAGCTGGCATAATTTAA TAAACATTCGCCTTCATACCCTAAACACATATCCGCTCGTTCATCATGGAGTAATTTCTT TCATTTTAGGACTTTTAGGAATTTTTCTTCTTATGCCACGTTTTGAACGCAGATACGGAA CATTATGTACAATCGCCATGTTTTTTGGATTTTTGGAAGTAATTCCTGCCATTGCATACT TAATAGCTTGCTATGTTGCTGAGTCTGACGATGTCTATGTTGGTATTGGTGGTTGGGTTT ATTCGCTTCTGGCTATGTATCTCTTGAATCTTTTTGGAGATTTGCATCCCAAACTTTTGA ATCTTCCTCAAGTCGTAAGGATGGCATTAGCTTTAGTAGCTCCTGTCTTAGGACTTCCGT TAGATTTTTCAATTACGATCGTTTTGCACCTTACTGCTGTCGTTATTTCTATTATATTTT CCTTCGCTTATATGGACTTTTTCCTGCCACGAGGAGGCTTTCTTGTCTGGGTTGAAACGA AATTTTCTAAAATTATCGATGCTATCCCCAATTATATATCCGTGACAGAAGCTGCTTATT ATCAGGCAGACGGTGCTATCCCTATTCAAGATTTGGGTAGTAACAGCAGTGGTATTGTAT AAAAGCTTTATAGTTATATTTACTGTTGTACAAATTTGCCTACTTCTGTAACCGTTTCAT ATGTTTAATAATCCTTTAGCAAGTCAAAAAACGCCAAATCTCTAATGAACAGTATATTTG TTTCGTA
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  • Fasta :-

    MAIELGERISTSVGFLAELFLMKIPLFTVIVALLTIILGIVNIFLPIVDFFGLSWHNLIN IRLHTLNTYPLVHHGVISFILGLLGIFLLMPRFERRYGTLCTIAMFFGFLEVIPAIAYLI ACYVAESDDVYVGIGGWVYSLLAMYLLNLFGDLHPKLLNLPQVVRMALALVAPVLGLPLD FSITIVLHLTAVVISIIFSFAYMDFFLPRGGFLVWVETKFSKIIDAIPNYISVTEAAYYQ ADGAIPIQDLGSNSSGIV

    No Results
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SPAC19B12.06c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India