SPAC23D3.07 | 20S proteasome complex subunit beta 2 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPAC23D3.07OTHER0.9988280.0004570.000715
No Results

  • Fasta :-

    >SPAC23D3.07 MMGINERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPI IADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQ HLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPD LERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSKYTYD RGTTAVLKEDIYKFVTVQDLDEMQVDV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/72 Sequence name : 72 Sequence length : 267 VALUES OF COMPUTED PARAMETERS Coef20 : 3.405 CoefTot : -0.384 ChDiff : -3 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.600 1.612 0.284 0.627 MesoH : -0.142 0.439 -0.237 0.259 MuHd_075 : 27.987 9.500 6.784 6.236 MuHd_095 : 11.453 6.575 2.403 1.734 MuHd_100 : 18.392 6.782 2.208 3.018 MuHd_105 : 20.244 4.053 2.214 3.490 Hmax_075 : 2.217 0.933 -1.402 3.290 Hmax_095 : -6.500 -2.100 -5.104 0.590 Hmax_100 : -5.600 -3.000 -5.385 0.590 Hmax_105 : -1.750 -2.500 -4.043 1.108 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9805 0.0195 DFMC : 0.9734 0.0266
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 267 SPAC23D3.07 MMGINERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAG 80 AGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYV 160 ALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSKYTYD 240 RGTTAVLKEDIYKFVTVQDLDEMQVDV 320 ................................................................................ 80 .............................P.................................................. 160 ................................................................................ 240 ........................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPAC23D3.07 7 MMGINER|KG 0.080 . SPAC23D3.07 8 MGINERK|GF 0.091 . SPAC23D3.07 17 DFEYYQR|NL 0.076 . SPAC23D3.07 24 NLLLQEK|GF 0.058 . SPAC23D3.07 30 KGFPTPK|AT 0.082 . SPAC23D3.07 44 IVGVIAK|DC 0.076 . SPAC23D3.07 54 VLGADTR|AT 0.076 . SPAC23D3.07 64 GPIIADK|NC 0.058 . SPAC23D3.07 67 IADKNCK|KL 0.064 . SPAC23D3.07 68 ADKNCKK|LH 0.081 . SPAC23D3.07 107 HSLYTNR|KP 0.087 . SPAC23D3.07 108 SLYTNRK|PR 0.070 . SPAC23D3.07 110 YTNRKPR|VV 0.528 *ProP* SPAC23D3.07 119 TALTMLK|QH 0.053 . SPAC23D3.07 124 LKQHLFR|YQ 0.162 . SPAC23D3.07 141 LGGYDCK|GP 0.059 . SPAC23D3.07 156 AHGSSDK|LP 0.064 . SPAC23D3.07 176 ISVLETK|YQ 0.071 . SPAC23D3.07 183 YQPDLER|HE 0.076 . SPAC23D3.07 191 EAMELVK|EA 0.066 . SPAC23D3.07 217 VVIDEEK|AT 0.057 . SPAC23D3.07 222 EKATPYR|GY 0.101 . SPAC23D3.07 226 PYRGYSK|PN 0.072 . SPAC23D3.07 230 YSKPNER|AT 0.101 . SPAC23D3.07 233 PNERATK|QS 0.119 . SPAC23D3.07 236 RATKQSK|YT 0.080 . SPAC23D3.07 241 SKYTYDR|GT 0.126 . SPAC23D3.07 248 GTTAVLK|ED 0.059 . SPAC23D3.07 253 LKEDIYK|FV 0.088 . ____________________________^_________________

  • Fasta :-

    >SPAC23D3.07 ACAACGTAGAAGAAAAAACCACCTTTACAAGTGCTATACACGTCGCTGGTGTTTTGTATC ACATTCTTTTTTATAAATTATTTTACTACACTGCACTAACAGTTTTAACGCACCATATCC TAGATTGGTATTTCTAAGTTAGTCAGAGGAATGTGTAATCCTGGTATCCACTGCCTACTA CATTGTCGATTAAGTAAATTGAATTCATAGACGCAATGATGGGAATAAATGAAAGAAAAG GTTTTGATTTTGAATACTATCAAAGAAATTTGCTTTTGCAGGAAAAAGGGTTCCCAACTC CAAAGGCTACATCAACAGGAACTACTATCGTTGGTGTCATTGCCAAAGATTGTATTGTCC TAGGTGCTGATACTCGTGCTACAGCTGGGCCCATCATTGCTGACAAAAATTGTAAAAAAC TTCATTTAATTTCTCCCAATATTTGGTGTGCTGGTGCAGGAACTGCAGCAGATACGGAAT TTGTTACATCAATGATTTCCTCTAATATAGAATTGCACTCTCTTTACACGAACCGTAAAC CAAGAGTTGTTACTGCTTTGACAATGCTAAAGCAACATCTCTTTCGTTATCAAGGACATA TTGGTGCTTACCTTGTGTTAGGTGGTTATGATTGTAAAGGTCCACATTTGTTTACCATTG CCGCACATGGCTCAAGTGATAAGTTGCCTTATGTTGCATTAGGATCCGGAAGTCTTGCAG CAATTTCTGTTTTAGAAACTAAATATCAACCAGACTTAGAACGACATGAAGCTATGGAGC TTGTTAAGGAAGCCATTGAGGCTGGTATTTTTAACGATCTAGGATCTGGTTCCAATTGTG ATTTAGTAGTTATCGATGAGGAAAAAGCTACGCCATACAGAGGTTATTCCAAACCTAATG AACGTGCAACAAAACAATCTAAGTACACCTATGATCGCGGCACCACTGCAGTTCTGAAAG AGGACATTTACAAGTTCGTAACTGTTCAAGATCTTGATGAAATGCAAGTTGATGTATAGA TTTTGCATCTATAAGGCTTACTATAAGGCCATGATACCTATATGTTGCAGCTCCTCTCGC TGATTATCGTTTTTATGTTCTATTTGAGATTTAAATAAAGTTTTTCTGATGCTTCACAAA ATTTGATTATTATAGAAAACTATTTTTACTACTCTCCTTACGGCAACGCATTTCTTAAAC TTTCGTCTGAGTAAATAGATAAAATTGTTACGTTTGTTGGTAAAAAGCCTACCATGTAAT GACAAATATGAGATCATCAAACCTCAATAATCTAATTACTAAGTGAGCGATACATATCTA CTTCGTTTCAGTTTTGAAACTGTGCGAGTTCGTTGGTTTAAACCGAGTCCATCGTTTGTT AGTGTTGCTTATATGCATACTCTTTACAATAACCAACTGTGATAAATCAATAATTATAAC TGTTATCAATTGTG
  • Download Fasta

  • Fasta :-

    MMGINERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPI IADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQ HLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPD LERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSKYTYD RGTTAVLKEDIYKFVTVQDLDEMQVDV

  • title: active site
  • coordinates: T36,D52,R54,K68,S164,D201,S204,G205
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SPAC23D3.07      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India