SPAC323.02c | 20S proteasome complex subunit alpha 5, Pup2 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPAC323.02cOTHER0.9997650.0000890.000147
No Results

  • Fasta :-

    >SPAC323.02c MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA LRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKS ELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEMADAVA REQQRMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/405 Sequence name : 405 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.247 ChDiff : -16 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.459 1.112 -0.001 0.489 MesoH : -0.878 0.313 -0.431 0.177 MuHd_075 : 27.072 13.945 5.961 6.427 MuHd_095 : 22.208 11.762 5.886 4.798 MuHd_100 : 14.853 10.931 4.120 3.898 MuHd_105 : 9.147 11.096 2.872 3.539 Hmax_075 : 3.063 2.600 -1.476 2.620 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6909 0.3091 DFMC : 0.7663 0.2337
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 SPAC323.02c MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISG 80 LTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPS 160 GTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEMADAVA 240 REQQRMD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC323.02c 5 --MFMTR|SE 0.116 . SPAC323.02c 10 TRSEYDR|GV 0.195 . SPAC323.02c 20 TFSPEGR|LF 0.113 . SPAC323.02c 32 YAIEAIK|LG 0.067 . SPAC323.02c 41 STAIGVK|TK 0.067 . SPAC323.02c 43 AIGVKTK|DA 0.086 . SPAC323.02c 52 VVLGVEK|RL 0.055 . SPAC323.02c 53 VLGVEKR|LT 0.212 . SPAC323.02c 66 ESHSVEK|LF 0.064 . SPAC323.02c 86 GLTADAR|TI 0.094 . SPAC323.02c 93 TIIEHAR|VQ 0.101 . SPAC323.02c 100 VQTQNHR|FT 0.098 . SPAC323.02c 122 ICDLALR|FG 0.082 . SPAC323.02c 132 GEDGEER|IM 0.073 . SPAC323.02c 136 EERIMSR|PF 0.113 . SPAC323.02c 165 PSGTYFR|YE 0.103 . SPAC323.02c 169 YFRYEAK|AI 0.081 . SPAC323.02c 179 SGSEPAK|SE 0.111 . SPAC323.02c 184 AKSELVK|EF 0.077 . SPAC323.02c 188 LVKEFHK|DM 0.069 . SPAC323.02c 201 AEVLILK|VL 0.060 . SPAC323.02c 204 LILKVLR|QV 0.111 . SPAC323.02c 210 RQVMEEK|LD 0.064 . SPAC323.02c 214 EEKLDSK|NV 0.066 . SPAC323.02c 220 KNVQLAK|VT 0.075 . SPAC323.02c 241 MADAVAR|EQ 0.087 . SPAC323.02c 245 VAREQQR|MD 0.094 . ____________________________^_________________

  • Fasta :-

    >SPAC323.02c TTTGGCTGGGTTTTGGTCAGTCAGCAACTACTACTTTACACGTTCTCTTTTAAAAATGTT TATGACTAGATCAGAATATGATAGAGGAGTAAATACCTTTTCTCCTGAAGGCCGGTTGTT TCAAGTGGAATATGCAATCGAAGCCATCAAATTAGGATCCACTGCTATTGGTGTGAAAAC TAAGGATGCCGTCGTCCTTGGTGTTGAAAAGAGATTAACTAGTCCACTTATGGAATCTCA TTCTGTTGAAAAGCTGTTTGAAATTGATTCACACATTGGTTGCGCAATTTCAGGCCTAAC AGCTGATGCCCGTACAATTATTGAACATGCTAGAGTTCAAACACAAAATCATCGTTTTAC CTATGATGAACCACAAGGTATAGAAAGTACTACCCAGTCAATTTGTGATCTCGCACTTCG CTTTGGTGAAGGAGAAGATGGCGAAGAACGCATCATGTCAAGACCGTTTGGTGTTGCTTT GTTAATTGCTGGAATAGATGAGCATGGTCCTCAACTATACCACTCTGAGCCTTCAGGTAC ATATTTCCGTTATGAAGCTAAAGCTATTGGTTCAGGTAGTGAACCCGCGAAAAGCGAACT AGTGAAGGAATTTCACAAAGATATGACTCTCGAGGAAGCTGAAGTATTGATTCTCAAAGT ACTTCGACAAGTAATGGAAGAAAAGCTTGATTCCAAAAATGTTCAACTTGCCAAAGTTAC CGCTGAGGGTGGATTTCACATCTATAATGACGAGGAAATGGCCGATGCTGTAGCACGTGA ACAGCAAAGAATGGATTAACCTATGATGATTTAAATTCCGCCAATATTACCAAATAAAGC ATGATTAGTCGAATGTTACATAACTCTACAGACTTGTTTCGCCATCACCTTTATCCTTTT CCTAGTATCTATGATTAGAAATGTATTCCTTTCA
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  • Fasta :-

    MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA LRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKS ELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEMADAVA REQQRMD

  • title: active site
  • coordinates: S35,E51,R53,K66,S173
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SPAC323.02c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India