SPAC3H1.10 | phytochelatin synthetase

_IDPredictionOTHERSPmTPCS_Position
SPAC3H1.10OTHER0.9327340.0044910.062775
No Results

  • Fasta :-

    >SPAC3H1.10 MNIVKRAVPELLRGMTNATPNIGLIKNKVVSFEAVGQLKKSFYKRQLPKQCLAFDSSLGK DVFLRALQEGRMENYFSLAQQMVTQNEPAFCGLGTLCMILNSLKVDPGRLWKGSWRWYDQ YMLDCCRSLSDIEKDGVTLEEFSCLANCNGLRTITKCVKDVSFDEFRKDVISCSTIENKI MAISFCRKVLGQTGDGHFSPVGGFSESDNKILILDVARFKYPCYWVDLKLMYESMFPIDK ASGQPRGYVLLEPMHIPLGVLTVGLNKYSWRNVSKHILQQAATVKNADNLAEILLSINQS SIPLIQERSNSSKSGDFEHFKECIRSTKTYHLFLKHTNTNVEYITMAFWAIFSLPMIQKA LPKGVLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCKTDTGCCSSSCCKNT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/182 Sequence name : 182 Sequence length : 414 VALUES OF COMPUTED PARAMETERS Coef20 : 4.089 CoefTot : -1.999 ChDiff : 8 ZoneTo : 54 KR : 10 DE : 2 CleavSite : 55 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.565 0.221 0.679 MesoH : -0.652 0.210 -0.385 0.217 MuHd_075 : 47.110 27.711 13.469 10.763 MuHd_095 : 54.748 36.092 14.543 11.650 MuHd_100 : 51.855 34.523 13.399 11.461 MuHd_105 : 44.250 30.999 11.312 9.729 Hmax_075 : 12.800 13.100 1.902 5.500 Hmax_095 : 17.588 24.200 4.062 6.134 Hmax_100 : 19.200 21.600 3.258 6.300 Hmax_105 : 19.017 23.333 3.898 6.953 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0432 0.9568 DFMC : 0.1655 0.8345 This protein is probably imported in mitochondria. f(Ser) = 0.0370 f(Arg) = 0.0556 CMi = 0.25063 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 414 SPAC3H1.10 MNIVKRAVPELLRGMTNATPNIGLIKNKVVSFEAVGQLKKSFYKRQLPKQCLAFDSSLGKDVFLRALQEGRMENYFSLAQ 80 QMVTQNEPAFCGLGTLCMILNSLKVDPGRLWKGSWRWYDQYMLDCCRSLSDIEKDGVTLEEFSCLANCNGLRTITKCVKD 160 VSFDEFRKDVISCSTIENKIMAISFCRKVLGQTGDGHFSPVGGFSESDNKILILDVARFKYPCYWVDLKLMYESMFPIDK 240 ASGQPRGYVLLEPMHIPLGVLTVGLNKYSWRNVSKHILQQAATVKNADNLAEILLSINQSSIPLIQERSNSSKSGDFEHF 320 KECIRSTKTYHLFLKHTNTNVEYITMAFWAIFSLPMIQKALPKGVLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCK 400 TDTGCCSSSCCKNT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPAC3H1.10 5 --MNIVK|RA 0.063 . SPAC3H1.10 6 -MNIVKR|AV 0.384 . SPAC3H1.10 13 AVPELLR|GM 0.073 . SPAC3H1.10 26 PNIGLIK|NK 0.061 . SPAC3H1.10 28 IGLIKNK|VV 0.080 . SPAC3H1.10 39 EAVGQLK|KS 0.061 . SPAC3H1.10 40 AVGQLKK|SF 0.109 . SPAC3H1.10 44 LKKSFYK|RQ 0.061 . SPAC3H1.10 45 KKSFYKR|QL 0.344 . SPAC3H1.10 49 YKRQLPK|QC 0.067 . SPAC3H1.10 60 FDSSLGK|DV 0.085 . SPAC3H1.10 65 GKDVFLR|AL 0.114 . SPAC3H1.10 71 RALQEGR|ME 0.067 . SPAC3H1.10 104 MILNSLK|VD 0.053 . SPAC3H1.10 109 LKVDPGR|LW 0.097 . SPAC3H1.10 112 DPGRLWK|GS 0.147 . SPAC3H1.10 116 LWKGSWR|WY 0.121 . SPAC3H1.10 127 YMLDCCR|SL 0.152 . SPAC3H1.10 134 SLSDIEK|DG 0.077 . SPAC3H1.10 152 ANCNGLR|TI 0.091 . SPAC3H1.10 156 GLRTITK|CV 0.090 . SPAC3H1.10 159 TITKCVK|DV 0.093 . SPAC3H1.10 167 VSFDEFR|KD 0.079 . SPAC3H1.10 168 SFDEFRK|DV 0.106 . SPAC3H1.10 179 CSTIENK|IM 0.058 . SPAC3H1.10 187 MAISFCR|KV 0.121 . SPAC3H1.10 188 AISFCRK|VL 0.141 . SPAC3H1.10 210 FSESDNK|IL 0.054 . SPAC3H1.10 218 LILDVAR|FK 0.092 . SPAC3H1.10 220 LDVARFK|YP 0.062 . SPAC3H1.10 229 CYWVDLK|LM 0.055 . SPAC3H1.10 240 SMFPIDK|AS 0.070 . SPAC3H1.10 246 KASGQPR|GY 0.157 . SPAC3H1.10 267 LTVGLNK|YS 0.059 . SPAC3H1.10 271 LNKYSWR|NV 0.210 . SPAC3H1.10 275 SWRNVSK|HI 0.089 . SPAC3H1.10 285 QQAATVK|NA 0.071 . SPAC3H1.10 308 IPLIQER|SN 0.136 . SPAC3H1.10 313 ERSNSSK|SG 0.115 . SPAC3H1.10 321 GDFEHFK|EC 0.068 . SPAC3H1.10 325 HFKECIR|ST 0.097 . SPAC3H1.10 328 ECIRSTK|TY 0.121 . SPAC3H1.10 335 TYHLFLK|HT 0.076 . SPAC3H1.10 359 SLPMIQK|AL 0.069 . SPAC3H1.10 363 IQKALPK|GV 0.088 . SPAC3H1.10 374 EIQSLLK|EV 0.074 . SPAC3H1.10 389 TQLTALK|KQ 0.063 . SPAC3H1.10 390 QLTALKK|QL 0.095 . SPAC3H1.10 400 SLTHCCK|TD 0.060 . SPAC3H1.10 412 CSSSCCK|NT 0.069 . ____________________________^_________________

  • Fasta :-

    >SPAC3H1.10 AATACAACTTCTTATTTTGATAACTTATATATAAGATATGTGTAAGTCAAGATATGTGAG TGGGGATATATACTTCCATTTCTTTCTCCTTTATTTAATATACAACAGACTTAATTTCAT CTCTTTTAGCTCACTTGCAGTATATTCATCTTAGTTAAATAGATGTGTTTTTCAATTTGA TCATTTTAAAGTTGCTTTTGCTTTTACATCTCATTTCCCTATTGTGTTCATTCAATGTCC TTCATTAACGACTAAAAATGAAAATAGTAACTTTACATCTAATATTCTAATGTAAAATAA ACTAAACGAAAAAAGATACATACTGCTTGTTTAAAGGCACAAGGAATTAAATTACTTGAT ATTCGGTTATCGGTTAAGGCAAAATGGATTAGTTCGTACTTCTAAGTACCACCTTTTTTG CTTGCAGTCTACTTAACTTTCAACAAAACAAATTTGGTAACACAGTCTTTTTTGAAAATC ACTCTTTTAAAAAAAGCAAAGGGTTATTTTGTATGAACATTGTTAAACGAGCAGTCCCAG AATTACTGAGAGGAATGACCAATGCAACACCAAATATCGGTTTGATTAAAAACAAGGTAG TAAGCTTTGAAGCTGTCGGACAACTCAAAAAATCTTTTTACAAAAGACAATTGCCTAAAC AATGTTTAGCTTTTGATTCATCTCTCGGTAAAGATGTTTTTTTACGAGCATTGCAAGAGG GACGGATGGAAAATTATTTTTCGCTTGCACAGCAGATGGTAACCCAAAACGAACCAGCTT TTTGTGGATTGGGAACTCTCTGCATGATTCTTAATTCGCTTAAAGTTGACCCGGGTAGAT TATGGAAGGGATCTTGGCGCTGGTATGATCAGTATATGCTTGATTGTTGTCGATCGCTAA GCGATATTGAAAAAGATGGTGTTACGCTAGAAGAGTTCTCTTGTTTAGCTAACTGCAATG GCCTTCGGACTATTACGAAATGTGTCAAAGATGTTAGCTTTGATGAATTTCGGAAAGACG TAATCTCTTGTTCTACCATTGAGAATAAAATTATGGCAATTTCATTTTGCCGGAAAGTGC TCGGTCAAACAGGCGATGGACATTTTAGTCCAGTTGGAGGCTTCAGTGAAAGTGATAACA AGATATTAATATTGGACGTTGCTCGATTTAAATATCCTTGCTACTGGGTGGATTTGAAGC TCATGTACGAGAGTATGTTTCCTATCGATAAAGCTAGCGGCCAACCTAGAGGCTATGTAC TTTTAGAGCCAATGCATATTCCTTTAGGTGTGCTTACAGTCGGTTTAAACAAGTACAGCT GGCGAAACGTTTCCAAGCATATACTGCAGCAGGCGGCAACGGTAAAAAACGCAGACAATT TGGCTGAAATACTTTTATCCATTAATCAATCATCAATTCCTCTAATCCAAGAACGCTCCA ACAGTTCAAAGTCTGGTGATTTCGAGCATTTTAAAGAATGTATTAGAAGCACAAAAACAT ATCATTTATTTCTGAAACATACGAATACCAATGTTGAATATATCACTATGGCTTTTTGGG CTATATTTTCCTTACCCATGATCCAAAAAGCGCTTCCCAAAGGCGTTCTAGAAGAGATTC AATCTTTATTGAAAGAAGTTGAAATTTCCGAAATTAACACTCAACTAACTGCGTTGAAAA AACAGCTTGATAGTTTAACCCATTGTTGTAAAACTGACACTGGGTGTTGTAGTTCAAGCT GCTGTAAAAATACGTGAATACTGGTAGAGATGGATATTTCTTCTCGTTGCTTATGAACTC AAAAAGTTTACATAGAGCCATGAACAAATTTTTTACAATTATTATTATTATTTTTGTTGT TGTTATTGTTACGCATTTATTTTATATTAAGGTCAATTCTAGAGAAAAGTATTACGCTCG TGCTTTCGTTTATAATCCAATCATTTCTTTTTTTTTGTGTGGTGTTGTTTTTCTGTCCAT TCTAATTGAAGTGTAATGGTTTTCTAAGGCTAGTAATTTTATTTTATTTCAGGAACAATG GTTGAAAAAATCAATTATTCCGAATCAAACAGATTACAAAACAAAAACGATGCGTACTTT TAACAACTTTAAACAAGCAAGGAAGACAAATGAACAAAATTCTTCTCTGAAAACAGCGAG TAACTATGAAAGAGAGTGATCCGGTTGCATTAGAAATTAATAATTAGAGCGGTTTATTTG TGTTTGTATATGCACCATTGTCGTTGATTAATTACAACCCAGCAT
  • Download Fasta

  • Fasta :-

    MNIVKRAVPELLRGMTNATPNIGLIKNKVVSFEAVGQLKKSFYKRQLPKQCLAFDSSLGK DVFLRALQEGRMENYFSLAQQMVTQNEPAFCGLGTLCMILNSLKVDPGRLWKGSWRWYDQ YMLDCCRSLSDIEKDGVTLEEFSCLANCNGLRTITKCVKDVSFDEFRKDVISCSTIENKI MAISFCRKVLGQTGDGHFSPVGGFSESDNKILILDVARFKYPCYWVDLKLMYESMFPIDK ASGQPRGYVLLEPMHIPLGVLTVGLNKYSWRNVSKHILQQAATVKNADNLAEILLSINQS SIPLIQERSNSSKSGDFEHFKECIRSTKTYHLFLKHTNTNVEYITMAFWAIFSLPMIQKA LPKGVLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCKTDTGCCSSSCCKNT

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPAC3H1.10205 SVGGFSESDN0.995unspSPAC3H1.10311 SERSNSSKSG0.997unsp

SPAC3H1.10      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India