SPBC1685.03 | signal peptidase subunit Sec11 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC1685.03SP0.0847610.9129360.002303CS pos: 31-32. TLS-FV. Pr: 0.3067
No Results

  • Fasta :-

    >SPBC1685.03 MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL DNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQTHLIT KGDNNKIDDVAMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLGL LTLIQKEEQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/567 Sequence name : 567 Sequence length : 189 VALUES OF COMPUTED PARAMETERS Coef20 : 4.381 CoefTot : 0.202 ChDiff : -4 ZoneTo : 34 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.412 1.735 0.199 0.689 MesoH : -0.578 0.381 -0.358 0.252 MuHd_075 : 29.168 17.963 8.541 6.640 MuHd_095 : 28.216 17.964 8.109 6.309 MuHd_100 : 23.800 20.908 7.278 6.746 MuHd_105 : 20.433 22.334 6.853 6.563 Hmax_075 : 15.700 18.900 3.602 6.100 Hmax_095 : 19.000 18.637 4.050 6.387 Hmax_100 : 19.000 22.100 4.050 7.480 Hmax_105 : 11.813 18.000 3.926 5.381 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3186 0.6814 DFMC : 0.3570 0.6430 This protein is probably imported in chloroplast. f(Ser) = 0.1176 f(Arg) = 0.0294 CMi = 1.05820 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 189 SPBC1685.03 MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFLDNRNPSFDEAKVPSVFEKII 80 YGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQTHLITKGDNNKIDDVAMFPKSINYLDRENHILGVVRGYFPYLGMI 160 TIWLTDYPILKYIMLGGLGLLTLIQKEEQ 240 ................................................................................ 80 ................................................................................ 160 ............................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC1685.03 3 ----MQK|LS 0.064 . SPBC1685.03 7 MQKLSFR|QG 0.088 . SPBC1685.03 28 SAYMGYK|TL 0.071 . SPBC1685.03 54 MEPSFQR|GD 0.082 . SPBC1685.03 63 LLFLDNR|NP 0.071 . SPBC1685.03 71 PSFDEAK|VP 0.069 . SPBC1685.03 78 VPSVFEK|II 0.102 . SPBC1685.03 98 VYSLPDR|PI 0.096 . SPBC1685.03 105 PIPIVHR|VV 0.094 . SPBC1685.03 108 IVHRVVK|LY 0.170 . SPBC1685.03 121 QTHLITK|GD 0.072 . SPBC1685.03 126 TKGDNNK|ID 0.067 . SPBC1685.03 135 DVAMFPK|SI 0.090 . SPBC1685.03 142 SINYLDR|EN 0.118 . SPBC1685.03 151 HILGVVR|GY 0.120 . SPBC1685.03 171 TDYPILK|YI 0.075 . SPBC1685.03 186 LLTLIQK|EE 0.056 . ____________________________^_________________

  • Fasta :-

    >SPBC1685.03 TTCGATAAATAAATAGAGGCTGGACGTTTGCGATTGCGTCGTCAACTGAAATTGTAATAG ATTTAGAACTTCAAAAATCTATTTTGCATGAAACGCATAGGGCCTCAGAATCACCTGGGT CAAGTTTTCTGGTGGTTGTGGTGACGGAAGTTGAACTTACCATTTCCCTACATCCTTATT ACTTTATGCGACAATGCAGAAACTGAGTTTTCGTCAGGGTTTAGCTCAAATTCTTAACCT TCTTCTCGTTCTTTCAAGCGCGTATATGGGTTACAAAACCCTCTCGTTTGTGACCGATTG CGAGAGCCCAGTAGTCGTAGTTTTGTCAGAATCTATGGAACCTTCTTTCCAACGAGGGGA TCTTTTATTTTTAGATAATCGAAATCCCTCTTTTGACGAAGCAAAAGTCCCTTCTGTATT TGAAAAAATTATATATGGATCACCTGTAGGCATTGGTGACATTGTTGTATACTCACTTCC TGACCGCCCTATACCCATTGTTCACCGAGTGGTAAAGCTATATGAATCTGAAAACCAGAC CCATTTAATCACAAAGGGTGACAATAATAAGATTGATGATGTTGCTATGTTTCCAAAATC TATAAACTACTTGGATAGAGAAAATCATATACTTGGTGTCGTCCGTGGATACTTTCCATA TTTGGGTATGATAACAATTTGGCTGACAGACTATCCCATACTGAAATACATCATGCTTGG AGGATTAGGACTGCTTACCTTGATTCAAAAAGAAGAGCAGTAATTTACTATGCCTTTTAA TGTCTAACCTTAACTCATGAGAGATGTATTGCAGTGTGGGTTATCAAATTAAAACCATGC TTACGAAACCGATTTTTACCGAGTTTATAAGTTTCAAAAGAGAGAAAAAAGAAAAAGGGA ATTTATATAATGAGATTCCTTTTGCTTGTTGCTCATGAATGCAACAATGAACGTTGATTA CTCTTGCTTCTCTTCATGTTTACCTTAGTGATAGCAAACTGATGAATAGTTGGCGAAACT ATGTTTAAGCTCTCATCAGCTTAGCATTAATAATTCTTTTACGTTAAATGTATGATTTCT CAATTTAATGTCATTTTTGATTTCATTAGGAAAAAATAGATGACATTTACTACTGGTGAA ATTATTTATTTTTCAATTCTTTTTATTATTTTGCATTTTTGCAATGTAAAAATATTATAA TATTACACAAAAGGATATAACTATGAAGCTACACAAAGCATTTTATGTTCATCGCTTCTA CGGCGCAGGTAATCAGACGAATTTTAAAAGTGTAATTGGTGATTTAAAAAGTTTATGTTA TGAAAAGAAAGTTAAGTACAATAAGAAAGCATTAAGCATGTGGA
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  • Fasta :-

    MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL DNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQTHLIT KGDNNKIDDVAMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLGL LTLIQKEEQ

  • title: Catalytic site
  • coordinates: S47,H104
No Results
No Results
IDSitePeptideScoreMethod
SPBC1685.0366 SNRNPSFDEA0.996unsp

SPBC1685.03      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India