SPBC16C6.07c | 19S proteasome regulatory subunit Rpt1 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC16C6.07cOTHER0.9998950.0000110.000094
No Results

  • Fasta :-

    >SPBC16C6.07c MPPKEDWEKYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKR INDTVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLK QIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGD VGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDAT FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ RTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILR IHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKV VKGNQKFSSTADYMNMSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/699 Sequence name : 699 Sequence length : 438 VALUES OF COMPUTED PARAMETERS Coef20 : 2.042 CoefTot : -0.619 ChDiff : -9 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.200 1.088 -0.100 0.428 MesoH : -1.097 0.186 -0.435 0.118 MuHd_075 : 13.161 7.375 3.703 1.607 MuHd_095 : 12.332 5.535 4.338 3.969 MuHd_100 : 17.687 6.648 5.557 4.184 MuHd_105 : 25.754 9.428 7.096 4.575 Hmax_075 : -18.400 -6.650 -7.673 -0.630 Hmax_095 : -15.838 -10.100 -7.001 0.026 Hmax_100 : -14.000 -8.200 -5.763 0.770 Hmax_105 : -5.600 -5.483 -4.531 1.948 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9975 0.0025 DFMC : 0.9959 0.0041
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 438 SPBC16C6.07c MPPKEDWEKYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFW 80 DVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPK 160 IDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDAT 240 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 320 VLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFA 400 IRARRRVATEKDFLDAVQKVVKGNQKFSSTADYMNMSS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................P......................................................... 400 ...................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPBC16C6.07c 4 ---MPPK|ED 0.061 . SPBC16C6.07c 9 PKEDWEK|YQ 0.071 . SPBC16C6.07c 12 DWEKYQK|PV 0.084 . SPBC16C6.07c 22 TEEENDK|NP 0.057 . SPBC16C6.07c 36 GDIELLK|SY 0.070 . SPBC16C6.07c 45 ATGPYAR|EL 0.100 . SPBC16C6.07c 51 RELAAIK|ED 0.055 . SPBC16C6.07c 59 DTEAVLK|RI 0.058 . SPBC16C6.07c 60 TEAVLKR|IN 0.336 . SPBC16C6.07c 68 NDTVGIK|ES 0.064 . SPBC16C6.07c 86 WDVAADR|QR 0.081 . SPBC16C6.07c 88 VAADRQR|MS 0.124 . SPBC16C6.07c 99 QPLQVAR|CT 0.136 . SPBC16C6.07c 102 QVARCTK|II 0.197 . SPBC16C6.07c 112 NEQSAEK|NA 0.060 . SPBC16C6.07c 120 AYVINLK|QI 0.061 . SPBC16C6.07c 124 NLKQIAK|FV 0.078 . SPBC16C6.07c 132 VVSLGER|VS 0.070 . SPBC16C6.07c 143 DIEEGMR|VG 0.066 . SPBC16C6.07c 148 MRVGCDR|NK 0.109 . SPBC16C6.07c 150 VGCDRNK|YA 0.069 . SPBC16C6.07c 160 QLPLPPK|ID 0.062 . SPBC16C6.07c 173 MMQVEEK|PD 0.067 . SPBC16C6.07c 185 GDVGGCK|EQ 0.060 . SPBC16C6.07c 190 CKEQIER|LR 0.078 . SPBC16C6.07c 192 EQIERLR|EV 0.089 . SPBC16C6.07c 204 PLLSPER|FV 0.113 . SPBC16C6.07c 207 SPERFVK|LG 0.118 . SPBC16C6.07c 214 LGIDPPK|GI 0.076 . SPBC16C6.07c 226 GPPGTGK|TL 0.064 . SPBC16C6.07c 231 GKTLCAR|AV 0.108 . SPBC16C6.07c 236 ARAVANR|TD 0.095 . SPBC16C6.07c 243 TDATFIR|VI 0.156 . SPBC16C6.07c 252 GSELVQK|YV 0.132 . SPBC16C6.07c 259 YVGEGAR|MV 0.137 . SPBC16C6.07c 262 EGARMVR|EL 0.241 . SPBC16C6.07c 269 ELFEMAR|TK 0.085 . SPBC16C6.07c 271 FEMARTK|KA 0.081 . SPBC16C6.07c 272 EMARTKK|AC 0.304 . SPBC16C6.07c 288 DAIGGAR|FD 0.113 . SPBC16C6.07c 301 GDNEVQR|TM 0.107 . SPBC16C6.07c 316 LDGFDPR|GN 0.130 . SPBC16C6.07c 320 DPRGNIK|VL 0.065 . SPBC16C6.07c 327 VLFATNR|PN 0.084 . SPBC16C6.07c 337 LDEALMR|PG 0.083 . SPBC16C6.07c 340 ALMRPGR|ID 0.354 . SPBC16C6.07c 343 RPGRIDR|KV 0.596 *ProP* SPBC16C6.07c 344 PGRIDRK|VE 0.068 . SPBC16C6.07c 355 LPDLEGR|AH 0.080 . SPBC16C6.07c 360 GRAHILR|IH 0.100 . SPBC16C6.07c 364 ILRIHAK|SM 0.093 . SPBC16C6.07c 370 KSMAIDK|DI 0.087 . SPBC16C6.07c 373 AIDKDIR|WE 0.070 . SPBC16C6.07c 379 RWELIAR|LC 0.076 . SPBC16C6.07c 390 QTGAELR|SV 0.277 . SPBC16C6.07c 402 AGMFAIR|AR 0.083 . SPBC16C6.07c 404 MFAIRAR|RR 0.101 . SPBC16C6.07c 405 FAIRARR|RV 0.477 . SPBC16C6.07c 406 AIRARRR|VA 0.166 . SPBC16C6.07c 411 RRVATEK|DF 0.081 . SPBC16C6.07c 419 FLDAVQK|VV 0.069 . SPBC16C6.07c 422 AVQKVVK|GN 0.069 . SPBC16C6.07c 426 VVKGNQK|FS 0.072 . ____________________________^_________________

  • Fasta :-

    >SPBC16C6.07c TCTAGGTTAGTATAATGTGTCGAATATACCTGTACCTATACTGAACCAACTACAATGCCA CCTAAAGAAGATTGGGAGAAATACCAAAAGCCAGTTGATACGGAAGAAGAAAATGATAAA AATCCACCACCTTTAGACGAAGGAGACATCGAGCTCTTAAAAAGCTACGCTACAGGCCCA TATGCTAGAGAATTAGCAGCTATTAAAGAAGATACAGAGGCTGTGTTAAAAAGAATTAAT GATACTGTTGGAATTAAGGAGTCTGACACTGGTCTAGCACCAATTTCATTTTGGGACGTT GCTGCGGACCGCCAAAGGATGAGTGAAGAACAACCTTTACAGGTTGCCAGATGTACCAAA ATTATTGAGAATGAACAATCTGCGGAGAAAAATGCATATGTCATTAATTTGAAACAGATT GCAAAATTTGTTGTCAGTTTAGGTGAACGAGTTAGTCCCACCGATATTGAAGAAGGGATG CGTGTCGGTTGTGATCGTAACAAATATGCTATTCAGCTTCCTCTTCCTCCCAAAATTGAT CCTTCAGTTACTATGATGCAAGTTGAAGAAAAGCCAGATGTTACTTACGGAGATGTGGGT GGTTGTAAAGAACAAATAGAAAGACTTCGCGAAGTCGTCGAGCTTCCTTTACTATCTCCC GAAAGATTTGTTAAGCTTGGTATTGACCCTCCCAAGGGTATTATGCTTTATGGACCACCA GGGACTGGTAAGACACTATGTGCTCGTGCTGTTGCCAATCGGACTGATGCAACTTTTATT CGTGTAATCGGTTCCGAGTTGGTTCAAAAATATGTCGGTGAAGGTGCTCGTATGGTTAGA GAATTATTTGAAATGGCACGAACTAAAAAAGCATGTATTATCTTTTTTGACGAAATTGAC GCTATTGGCGGGGCTCGCTTTGATGATGGAGCAGGTGGTGATAATGAAGTTCAAAGAACA ATGCTTGAATTAATTACCCAGTTGGATGGATTCGACCCTCGTGGTAACATTAAAGTTCTG TTTGCGACCAACAGACCAAATACCTTGGATGAAGCTTTGATGCGTCCCGGTCGTATAGAT CGTAAAGTTGAGTTTGGTTTACCTGATTTAGAAGGTCGTGCTCATATTTTACGCATCCAC GCTAAAAGTATGGCGATTGACAAGGATATTCGTTGGGAATTAATTGCACGGTTATGCCCT TCACAAACTGGTGCAGAGCTTCGTTCTGTATGCACTGAGGCTGGAATGTTTGCGATTCGT GCTAGAAGAAGAGTTGCTACCGAAAAGGATTTCCTTGACGCCGTTCAAAAGGTTGTAAAA GGTAACCAAAAGTTTAGCAGTACTGCTGATTATATGAACATGAGCTCTTAGATAATTTCC TTTATTACGCCATTCTTTATGAGATTTCATAGGTTTATCCCGCAAATGAATTAAAAAACT TCAAAATTTTGTTGCCTGGTCACTTTAGCTGTTCGAACTAGAAACGTATTAGAAAGCTTT GTTTGATATCTTATGTAATAAATGACAGGTTGCAACGTTGGCATGAAAG
  • Download Fasta

  • Fasta :-

    MPPKEDWEKYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKR INDTVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLK QIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGD VGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDAT FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ RTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILR IHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKV VKGNQKFSSTADYMNMSS

  • title: ATP binding site
  • coordinates: P221,P222,G223,T224,G225,K226,T227,L228,D279,N326
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC16C6.07c409 TRRVATEKDF0.992unspSPBC16C6.07c409 TRRVATEKDF0.992unspSPBC16C6.07c409 TRRVATEKDF0.992unspSPBC16C6.07c90 SRQRMSEEQP0.996unspSPBC16C6.07c134 SGERVSPTDI0.998unsp

SPBC16C6.07c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India