SPBC16D10.03 | EKC/KEOPS complex ATPase subunit Pgp2

_IDPredictionOTHERSPmTPCS_Position
SPBC16D10.03OTHER0.9875000.0083140.004187
No Results

  • Fasta :-

    >SPBC16D10.03 MGKPLIALGLEGSANKLGVGIILHDTNGSAKILANVRHTYITPPGQGFLPSDTAKHHRAW IIPLIKQAFAEAKISFKDIDCICFTKGPGIGAPLNSVALCARMLSLIHKKPLVAVNHCIG HIEMGREITGAQNPVVLYVSGGNTQVIAYSEKKYRIFGETLDIAIGNCLDRFARIIGLSN APSPGYNIMQEAKKGKRFIELPYTVKGMDCSFSGLLSGVEAAATELLDPKNPSSVTKQDL CYSLQETGFAMLVEITERAMAHIRADSVLIVGGVGCNERLQQMMAEMSSDRGADVFSTDE RFCIDNGIMIAQAGLLAYKTGDRCAVAESTITQRYRTDDVYISWRD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/847 Sequence name : 847 Sequence length : 346 VALUES OF COMPUTED PARAMETERS Coef20 : 3.131 CoefTot : -3.654 ChDiff : 1 ZoneTo : 70 KR : 7 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.706 1.300 0.117 0.534 MesoH : -0.225 0.592 -0.234 0.272 MuHd_075 : 34.775 19.662 10.111 5.819 MuHd_095 : 29.127 21.068 8.646 6.463 MuHd_100 : 28.916 22.426 9.487 5.677 MuHd_105 : 29.876 24.935 11.282 6.413 Hmax_075 : 15.633 17.967 3.767 6.183 Hmax_095 : 12.600 13.387 3.282 5.320 Hmax_100 : 10.400 19.200 0.781 4.690 Hmax_105 : 14.700 16.600 3.003 5.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9728 0.0272 DFMC : 0.9702 0.0298
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 346 SPBC16D10.03 MGKPLIALGLEGSANKLGVGIILHDTNGSAKILANVRHTYITPPGQGFLPSDTAKHHRAWIIPLIKQAFAEAKISFKDID 80 CICFTKGPGIGAPLNSVALCARMLSLIHKKPLVAVNHCIGHIEMGREITGAQNPVVLYVSGGNTQVIAYSEKKYRIFGET 160 LDIAIGNCLDRFARIIGLSNAPSPGYNIMQEAKKGKRFIELPYTVKGMDCSFSGLLSGVEAAATELLDPKNPSSVTKQDL 240 CYSLQETGFAMLVEITERAMAHIRADSVLIVGGVGCNERLQQMMAEMSSDRGADVFSTDERFCIDNGIMIAQAGLLAYKT 320 GDRCAVAESTITQRYRTDDVYISWRD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC16D10.03 3 ----MGK|PL 0.068 . SPBC16D10.03 16 LEGSANK|LG 0.056 . SPBC16D10.03 31 DTNGSAK|IL 0.079 . SPBC16D10.03 37 KILANVR|HT 0.082 . SPBC16D10.03 55 LPSDTAK|HH 0.086 . SPBC16D10.03 58 DTAKHHR|AW 0.112 . SPBC16D10.03 66 WIIPLIK|QA 0.068 . SPBC16D10.03 73 QAFAEAK|IS 0.075 . SPBC16D10.03 77 EAKISFK|DI 0.086 . SPBC16D10.03 86 DCICFTK|GP 0.071 . SPBC16D10.03 102 SVALCAR|ML 0.099 . SPBC16D10.03 109 MLSLIHK|KP 0.069 . SPBC16D10.03 110 LSLIHKK|PL 0.116 . SPBC16D10.03 126 GHIEMGR|EI 0.098 . SPBC16D10.03 152 VIAYSEK|KY 0.069 . SPBC16D10.03 153 IAYSEKK|YR 0.104 . SPBC16D10.03 155 YSEKKYR|IF 0.143 . SPBC16D10.03 171 IGNCLDR|FA 0.135 . SPBC16D10.03 174 CLDRFAR|II 0.316 . SPBC16D10.03 193 NIMQEAK|KG 0.059 . SPBC16D10.03 194 IMQEAKK|GK 0.103 . SPBC16D10.03 196 QEAKKGK|RF 0.072 . SPBC16D10.03 197 EAKKGKR|FI 0.166 . SPBC16D10.03 206 ELPYTVK|GM 0.062 . SPBC16D10.03 230 TELLDPK|NP 0.063 . SPBC16D10.03 237 NPSSVTK|QD 0.073 . SPBC16D10.03 258 LVEITER|AM 0.083 . SPBC16D10.03 264 RAMAHIR|AD 0.108 . SPBC16D10.03 279 GVGCNER|LQ 0.074 . SPBC16D10.03 291 AEMSSDR|GA 0.113 . SPBC16D10.03 301 VFSTDER|FC 0.119 . SPBC16D10.03 319 AGLLAYK|TG 0.056 . SPBC16D10.03 323 AYKTGDR|CA 0.078 . SPBC16D10.03 334 ESTITQR|YR 0.082 . SPBC16D10.03 336 TITQRYR|TD 0.101 . SPBC16D10.03 345 DVYISWR|D- 0.109 . ____________________________^_________________

  • Fasta :-

    >SPBC16D10.03 GTGTAAGCAAATGGATTAATAAATGGTGTAAGCGAATTTATCTAGTACACACACTTTTCT TGGACTACAATATATAGATTATAATATATCGAAAAATATTCAGTTTCTTATTTTTGGGTA TTTTCTATCAGAAATAACTTTAGTTGGTTTGTTTGAGCTTGCTCGCAACTTTTTAACTTA CTGATACATAAAAGAACGGCATATGTTGACCAGTGAGGAACCGTATATTTATTCACGTTA ATAATTATGGGAAAACCTTTAATTGCACTTGGATTAGAGGGTTCAGCAAACAAATTAGGC GTTGGTATTATTTTGCATGATACCAATGGATCGGCTAAAATATTAGCAAATGTCAGACAC ACTTATATCACTCCTCCCGGACAGGGATTCTTGCCCAGCGATACTGCTAAGCATCATCGT GCGTGGATAATCCCTTTAATTAAGCAAGCGTTTGCTGAGGCAAAAATTTCTTTTAAAGAT ATTGATTGCATTTGTTTCACAAAGGGGCCAGGAATCGGTGCTCCTCTGAATAGTGTAGCT CTTTGTGCTAGGATGTTATCACTAATTCACAAGAAACCTTTAGTAGCAGTTAATCATTGT ATTGGTCACATTGAAATGGGTCGTGAAATTACGGGTGCACAAAATCCTGTCGTGCTTTAT GTTTCTGGGGGAAACACTCAAGTAATTGCATACTCAGAGAAGAAGTATAGGATTTTTGGT GAAACGCTTGATATTGCTATAGGCAATTGTTTGGATCGATTTGCCAGAATCATTGGTTTG TCCAATGCACCTTCACCTGGTTACAATATTATGCAAGAAGCAAAAAAAGGCAAAAGATTT ATAGAGTTACCCTATACTGTTAAAGGTATGGATTGTTCATTTTCCGGATTGTTGTCAGGG GTTGAAGCGGCAGCTACAGAGCTATTAGACCCAAAAAATCCGAGTTCTGTTACAAAGCAA GATCTTTGTTACTCTTTACAGGAAACTGGCTTTGCAATGCTAGTTGAAATTACAGAACGC GCGATGGCACATATCAGAGCTGATTCTGTTTTAATTGTTGGAGGTGTTGGATGCAATGAA CGTCTCCAACAAATGATGGCTGAAATGAGTTCGGATAGAGGCGCTGATGTTTTTTCTACA GATGAACGTTTCTGTATTGATAATGGTATAATGATAGCCCAAGCAGGGTTGTTGGCTTAT AAAACCGGGGACCGATGTGCCGTCGCAGAATCGACGATTACTCAAAGATATCGTACTGAC GATGTTTATATATCATGGAGGGATTAATACTTATATTCATGAACAAGGATCAGATGAATT TTATTTTAGGCATTTATATATACATTCTTCATTATGAAGATCGTATCCAGTAAAATATTG AGTTTTTTGAAGTAGATTATCAAAATTCCAGTTGAGGTAAAATAGCTTTTTCACATAAAT TGTCACTATTAAAAAACCTTTGGTTCTTTCTAATAATAACTTTAGCATTATTTGTCGTTG CAACCTGAGAACAATCCTTAATTGGAGAGCTATTCTCGTCAAATTTCGTTGCTATATCAT TCTCATTTAACGTGAAAATCCATTTGTTTTTTTCTAATAATTTCAATAAATGAGAAACTA TATTTGAAGACGAAAGAGTAGATAACGAGCCAAACATAATACATTTCACTTTCGCCCTGC TTAAAGCAACGTTCAAACGATGCCAATCGCGTAGCAATTCTCCAA
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  • Fasta :-

    MGKPLIALGLEGSANKLGVGIILHDTNGSAKILANVRHTYITPPGQGFLPSDTAKHHRAW IIPLIKQAFAEAKISFKDIDCICFTKGPGIGAPLNSVALCARMLSLIHKKPLVAVNHCIG HIEMGREITGAQNPVVLYVSGGNTQVIAYSEKKYRIFGETLDIAIGNCLDRFARIIGLSN APSPGYNIMQEAKKGKRFIELPYTVKGMDCSFSGLLSGVEAAATELLDPKNPSSVTKQDL CYSLQETGFAMLVEITERAMAHIRADSVLIVGGVGCNERLQQMMAEMSSDRGADVFSTDE RFCIDNGIMIAQAGLLAYKTGDRCAVAESTITQRYRTDDVYISWRD

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC16D10.0375 SEAKISFKDI0.997unspSPBC16D10.03343 SDVYISWRD-0.995unsp

SPBC16D10.03      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India