SPBC19C2.04c | ubiquitin C-terminal hydrolase Ubp11

_IDPredictionOTHERSPmTPCS_Position
SPBC19C2.04cOTHER0.8623060.1027510.034943
No Results

  • Fasta :-

    >SPBC19C2.04c MSTTPLSISRAKKYKTVFKGAAILTTFAALYIVTSPSTGKRLVKNASIKGLYNVSGNDCF LNCVLQSLASQESLLEILKLRCSSSTLYATLYELLQKLNSGPGNPITPGSFLNSLEIATN KKLVRSIQQDAQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIGTMEQKVQCCQCLAI SISYSTATSIQLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDSCFKSSPKHSKTSCIR TVDWKNPPTILQIQLERTSYTCQGLTRNNVSISFPSKLILKNKHHYILRSLITHSGSVTY GHYLCYRLQDDIWWKANDSLITKSSLNEALSQTRSACLLFYEMESPLALD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/166 Sequence name : 166 Sequence length : 350 VALUES OF COMPUTED PARAMETERS Coef20 : 4.231 CoefTot : -0.611 ChDiff : 10 ZoneTo : 71 KR : 9 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.694 1.812 0.391 0.660 MesoH : -0.157 0.501 -0.231 0.212 MuHd_075 : 38.444 27.702 12.024 8.568 MuHd_095 : 36.792 22.921 10.550 8.111 MuHd_100 : 26.067 15.384 7.516 6.593 MuHd_105 : 28.488 21.268 8.709 7.954 Hmax_075 : 14.525 16.538 3.225 4.979 Hmax_095 : 13.125 16.600 2.761 5.075 Hmax_100 : 11.500 11.800 2.237 4.780 Hmax_105 : 11.462 11.638 2.186 4.603 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0707 0.9293 DFMC : 0.0651 0.9349 This protein is probably imported in chloroplast. f(Ser) = 0.1268 f(Arg) = 0.0282 CMi = 1.15830 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 350 SPBC19C2.04c MSTTPLSISRAKKYKTVFKGAAILTTFAALYIVTSPSTGKRLVKNASIKGLYNVSGNDCFLNCVLQSLASQESLLEILKL 80 RCSSSTLYATLYELLQKLNSGPGNPITPGSFLNSLEIATNKKLVRSIQQDAQEFLQHLVETLELQKPHTYKWSKVLSFPV 160 DSPFIGTMEQKVQCCQCLAISISYSTATSIQLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDSCFKSSPKHSKTSCIR 240 TVDWKNPPTILQIQLERTSYTCQGLTRNNVSISFPSKLILKNKHHYILRSLITHSGSVTYGHYLCYRLQDDIWWKANDSL 320 ITKSSLNEALSQTRSACLLFYEMESPLALD 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC19C2.04c 10 TPLSISR|AK 0.079 . SPBC19C2.04c 12 LSISRAK|KY 0.076 . SPBC19C2.04c 13 SISRAKK|YK 0.402 . SPBC19C2.04c 15 SRAKKYK|TV 0.171 . SPBC19C2.04c 19 KYKTVFK|GA 0.077 . SPBC19C2.04c 40 TSPSTGK|RL 0.058 . SPBC19C2.04c 41 SPSTGKR|LV 0.278 . SPBC19C2.04c 44 TGKRLVK|NA 0.191 . SPBC19C2.04c 49 VKNASIK|GL 0.075 . SPBC19C2.04c 79 SLLEILK|LR 0.052 . SPBC19C2.04c 81 LEILKLR|CS 0.094 . SPBC19C2.04c 97 LYELLQK|LN 0.060 . SPBC19C2.04c 121 LEIATNK|KL 0.063 . SPBC19C2.04c 122 EIATNKK|LV 0.123 . SPBC19C2.04c 125 TNKKLVR|SI 0.163 . SPBC19C2.04c 146 ETLELQK|PH 0.051 . SPBC19C2.04c 151 QKPHTYK|WS 0.062 . SPBC19C2.04c 154 HTYKWSK|VL 0.067 . SPBC19C2.04c 171 IGTMEQK|VQ 0.057 . SPBC19C2.04c 214 SLMEADR|EQ 0.079 . SPBC19C2.04c 222 QHISDYK|CD 0.058 . SPBC19C2.04c 228 KCDSCFK|SS 0.068 . SPBC19C2.04c 232 CFKSSPK|HS 0.062 . SPBC19C2.04c 235 SSPKHSK|TS 0.069 . SPBC19C2.04c 240 SKTSCIR|TV 0.119 . SPBC19C2.04c 245 IRTVDWK|NP 0.066 . SPBC19C2.04c 257 LQIQLER|TS 0.083 . SPBC19C2.04c 267 TCQGLTR|NN 0.076 . SPBC19C2.04c 277 SISFPSK|LI 0.075 . SPBC19C2.04c 281 PSKLILK|NK 0.057 . SPBC19C2.04c 283 KLILKNK|HH 0.068 . SPBC19C2.04c 289 KHHYILR|SL 0.140 . SPBC19C2.04c 307 GHYLCYR|LQ 0.087 . SPBC19C2.04c 315 QDDIWWK|AN 0.063 . SPBC19C2.04c 323 NDSLITK|SS 0.072 . SPBC19C2.04c 334 EALSQTR|SA 0.107 . ____________________________^_________________

  • Fasta :-

    >SPBC19C2.04c CAGGCGCATATTTATGCTGAGGGTTTGGCCCTCCTGTCCCTCTCTTCCAACCTGCTTTTT TTCTCTAAAGGTTGCTCTTTTATACACATATCTGATTGCAAATTATTTGCTTTGTGTCGT ACTTGTGAATGAGTGAGCTTTCTCTGCAAAAACTTTAATACCTTTACTTTTATCTTAATT TCTCCATCAAAAAACAATCCATACCGACAAATCGGCACTGCCTCCCCATCGTCTAATCTT ACCTTACAAAAAATCCTTCACACATAATCAAGTGAAAAAAATCTCCCATCTTTTTTGGAT CCCTTTTTTTTTCTTCTTCGAAAAAACTTTTGTCTGTTTCTTATAGACGCCTCTTGCCTT TTTTCTTGTTCTTGATTCCATCGTAATTTATTCTCTTTGATAGGATCGCTATACTTTTTT TTTCTCTTTTCTTATTTTTTTTTTTTTAAATTGTGCTATTTCATTTCTCTACAATTACTT CCTAACGTTTTTTAATTTCTTTTTCTTTTTTATCCTTTCATATCTTATCGCCTATTTCAT CTATTGCGATCGCTAAAATTGCAAAGGTAAAATCATTCTACCACTTTCAACTTTATCTAT TTATTTATTGACTCCCTCCTCCCAAAAAGTAATATTTGTGTCTTTTGTCGCATTACTCGA CAACATTCTAATTGCTGACACTTTTTTTGACAACTGTTTTTTTTTTTAAATTTGCCTTTG TAAAACTTTCAAACTTTTACTCATCCTATCACTGATTATTTCCTAAAAAGGTTGTTTTAT GCTCAAAAAGTTTGGTTCTTATTACCTCGTCTCCCTAACTATACCTATATTGTACGTTAT TATCGTGTCCTTTACCTCACCGCCATTGGACTCGTGTTATCGTTTATACCAATAAAGCTA GTAACAACAACCTAGTGGATATATGCTGTGACTTAACGCTCGTCTTCTATTCTTATTTCC CTTGCCAAAAAAAATTTGTTTTTATGCATAAATTTTTTTTTTCTTTTGTAAATTATATTC TCTGTTACCTCTAATAATTTCTTTTCCCTAATTCTTCATTGCATGCATTCATTATCATGT CTACAACGCCATTGTCCATTTCTAGGGCAAAAAAATACAAAACAGTTTTCAAGGGTGCCG CCATTTTAACTACGTTTGCTGCCCTTTACATCGTTACCTCTCCTTCCACTGGCAAGAGGT TGGTGAAAAACGCCTCCATCAAAGGCCTTTACAATGTTTCGGGTAACGATTGTTTCCTCA ATTGTGTTTTGCAATCCCTAGCAAGTCAAGAATCATTATTGGAAATCCTAAAACTCCGTT GTTCTTCCTCTACCTTATACGCTACCCTTTATGAACTTCTGCAAAAATTAAATAGTGGCC CCGGTAATCCAATCACTCCCGGTTCCTTCCTCAATTCATTAGAGATTGCCACTAATAAAA AACTTGTTCGTTCCATTCAACAAGATGCACAAGAGTTTCTACAACATCTAGTGGAAACTT TGGAACTTCAAAAACCTCACACTTACAAATGGTCGAAGGTACTCTCCTTTCCTGTAGATT CGCCATTCATAGGAACTATGGAGCAAAAGGTACAATGTTGTCAATGCCTTGCCATTAGTA TTAGTTATTCTACTGCCACATCGATACAGCTTTGTCTACCTCCGGAGTACAGTGGAAATT CTAACGTTTCCTTGCTCTCTTTAATGGAAGCCGATCGCGAACAGCACATCTCTGACTATA AATGTGACTCTTGCTTCAAATCCTCCCCAAAACATTCCAAAACTTCATGCATTCGTACCG TTGATTGGAAAAATCCTCCTACGATTTTGCAAATTCAACTTGAGAGAACATCATATACCT GCCAAGGTTTAACCAGAAATAATGTTTCTATCTCATTTCCTAGCAAACTTATCCTAAAAA ACAAACATCATTATATTTTACGATCCTTAATCACCCATTCCGGAAGTGTTACTTATGGTC ATTATCTTTGCTATAGACTTCAAGATGACATTTGGTGGAAGGCTAATGATTCTTTAATTA CTAAATCATCTCTCAATGAAGCTCTCAGTCAAACTCGTTCAGCTTGTCTTTTGTTTTACG AAATGGAATCTCCTCTTGCGCTTGATTAGCGCATATATGCTAGTTAATCGTATACGTTTT TGTACCTTAATAAAAAATTCTTGATATTTCTCCTAATGATTCCGACTGATGTCACCCTTT ATAAACTGTTGAAAGCTTCAAATTATAACCTGTTGTTTTGTAGCTAAAGCATTCAATACT AATATTTTGCAAAACTTGTGT
  • Download Fasta

  • Fasta :-

    MSTTPLSISRAKKYKTVFKGAAILTTFAALYIVTSPSTGKRLVKNASIKGLYNVSGNDCF LNCVLQSLASQESLLEILKLRCSSSTLYATLYELLQKLNSGPGNPITPGSFLNSLEIATN KKLVRSIQQDAQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIGTMEQKVQCCQCLAI SISYSTATSIQLCLPPEYSGNSNVSLLSLMEADREQHISDYKCDSCFKSSPKHSKTSCIR TVDWKNPPTILQIQLERTSYTCQGLTRNNVSISFPSKLILKNKHHYILRSLITHSGSVTY GHYLCYRLQDDIWWKANDSLITKSSLNEALSQTRSACLLFYEMESPLALD

  • title: Active Site
  • coordinates: N53,C59,H302,D318
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC19C2.04c237 SHSKTSCIRT0.991unspSPBC19C2.04c237 SHSKTSCIRT0.991unspSPBC19C2.04c237 SHSKTSCIRT0.991unspSPBC19C2.04c7 STTPLSISRA0.99unspSPBC19C2.04c230 SCFKSSPKHS0.995unsp

SPBC19C2.04c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India