SPBC19G7.04 | HMG box protein

_IDPredictionOTHERSPmTPCS_Position
SPBC19G7.04OTHER0.9999210.0000580.000022
No Results

  • Fasta :-

    >SPBC19G7.04 MQVSNSMSLNDEEDDIEFINYIPLLASPINSSTCSTSIHDKCPFKQHISENGQNFGSAIS SNISQRNFKTLRASHLSQYRDCNRENNTEDKNVISTGIAVNEKYQSVLKLKEKAPQISSA AKRKSFIKERGMLAKCFLARLEDEVFQGRLTSSLEKKEIGIVWSKSFSTTAGRANLKRNN KDAPLGKKTYAYIELSDKVIVTKERLYNTLAHEVCHLACWIIDNEMQNPHGACFKAWGKR IMNNMPYIEITSKHNYDIDFKYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQIC PKIKQPNAFQIFLKENSKRLRKLHPHITHKELMKKLSDEYHRTKDAKQNVSKSVSLISSS DL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/632 Sequence name : 632 Sequence length : 362 VALUES OF COMPUTED PARAMETERS Coef20 : 3.257 CoefTot : 0.035 ChDiff : 23 ZoneTo : 10 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 0.994 0.152 0.454 MesoH : -1.219 -0.193 -0.599 0.065 MuHd_075 : 8.089 7.145 2.430 2.264 MuHd_095 : 9.981 6.691 4.013 1.422 MuHd_100 : 5.551 1.725 1.682 0.422 MuHd_105 : 5.030 5.760 1.913 1.353 Hmax_075 : -6.100 2.200 -3.212 1.560 Hmax_095 : -2.500 1.600 -2.938 1.260 Hmax_100 : -6.700 -1.100 -4.145 0.590 Hmax_105 : -3.733 5.483 -2.403 2.135 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9813 0.0187 DFMC : 0.9717 0.0283
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 362 SPBC19G7.04 MQVSNSMSLNDEEDDIEFINYIPLLASPINSSTCSTSIHDKCPFKQHISENGQNFGSAISSNISQRNFKTLRASHLSQYR 80 DCNRENNTEDKNVISTGIAVNEKYQSVLKLKEKAPQISSAAKRKSFIKERGMLAKCFLARLEDEVFQGRLTSSLEKKEIG 160 IVWSKSFSTTAGRANLKRNNKDAPLGKKTYAYIELSDKVIVTKERLYNTLAHEVCHLACWIIDNEMQNPHGACFKAWGKR 240 IMNNMPYIEITSKHNYDIDFKYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQPNAFQIFLKENSKRL 320 RKLHPHITHKELMKKLSDEYHRTKDAKQNVSKSVSLISSSDL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC19G7.04 41 STSIHDK|CP 0.078 . SPBC19G7.04 45 HDKCPFK|QH 0.066 . SPBC19G7.04 66 SSNISQR|NF 0.121 . SPBC19G7.04 69 ISQRNFK|TL 0.167 . SPBC19G7.04 72 RNFKTLR|AS 0.095 . SPBC19G7.04 80 SHLSQYR|DC 0.104 . SPBC19G7.04 84 QYRDCNR|EN 0.084 . SPBC19G7.04 91 ENNTEDK|NV 0.081 . SPBC19G7.04 103 GIAVNEK|YQ 0.064 . SPBC19G7.04 109 KYQSVLK|LK 0.062 . SPBC19G7.04 111 QSVLKLK|EK 0.069 . SPBC19G7.04 113 VLKLKEK|AP 0.062 . SPBC19G7.04 122 QISSAAK|RK 0.072 . SPBC19G7.04 123 ISSAAKR|KS 0.397 . SPBC19G7.04 124 SSAAKRK|SF 0.263 . SPBC19G7.04 128 KRKSFIK|ER 0.072 . SPBC19G7.04 130 KSFIKER|GM 0.094 . SPBC19G7.04 135 ERGMLAK|CF 0.079 . SPBC19G7.04 140 AKCFLAR|LE 0.106 . SPBC19G7.04 149 DEVFQGR|LT 0.088 . SPBC19G7.04 156 LTSSLEK|KE 0.062 . SPBC19G7.04 157 TSSLEKK|EI 0.203 . SPBC19G7.04 165 IGIVWSK|SF 0.077 . SPBC19G7.04 173 FSTTAGR|AN 0.068 . SPBC19G7.04 177 AGRANLK|RN 0.058 . SPBC19G7.04 178 GRANLKR|NN 0.263 . SPBC19G7.04 181 NLKRNNK|DA 0.172 . SPBC19G7.04 187 KDAPLGK|KT 0.072 . SPBC19G7.04 188 DAPLGKK|TY 0.082 . SPBC19G7.04 198 YIELSDK|VI 0.062 . SPBC19G7.04 203 DKVIVTK|ER 0.058 . SPBC19G7.04 205 VIVTKER|LY 0.082 . SPBC19G7.04 235 PHGACFK|AW 0.080 . SPBC19G7.04 239 CFKAWGK|RI 0.061 . SPBC19G7.04 240 FKAWGKR|IM 0.152 . SPBC19G7.04 253 YIEITSK|HN 0.065 . SPBC19G7.04 261 NYDIDFK|YK 0.058 . SPBC19G7.04 263 DIDFKYK|WL 0.074 . SPBC19G7.04 270 WLCINEK|CN 0.063 . SPBC19G7.04 273 INEKCNK|LY 0.064 . SPBC19G7.04 277 CNKLYGR|HS 0.106 . SPBC19G7.04 280 LYGRHSK|SI 0.310 . SPBC19G7.04 286 KSINPQK|QV 0.091 . SPBC19G7.04 290 PQKQVCR|LC 0.093 . SPBC19G7.04 293 QVCRLCK|SQ 0.216 . SPBC19G7.04 297 LCKSQIK|QI 0.077 . SPBC19G7.04 302 IKQICPK|IK 0.071 . SPBC19G7.04 304 QICPKIK|QP 0.072 . SPBC19G7.04 314 AFQIFLK|EN 0.073 . SPBC19G7.04 318 FLKENSK|RL 0.059 . SPBC19G7.04 319 LKENSKR|LR 0.151 . SPBC19G7.04 321 ENSKRLR|KL 0.145 . SPBC19G7.04 322 NSKRLRK|LH 0.171 . SPBC19G7.04 330 HPHITHK|EL 0.089 . SPBC19G7.04 334 THKELMK|KL 0.082 . SPBC19G7.04 335 HKELMKK|LS 0.112 . SPBC19G7.04 342 LSDEYHR|TK 0.104 . SPBC19G7.04 344 DEYHRTK|DA 0.081 . SPBC19G7.04 347 HRTKDAK|QN 0.072 . SPBC19G7.04 352 AKQNVSK|SV 0.120 . ____________________________^_________________

  • Fasta :-

    >SPBC19G7.04 GAATGTTTCAATCAACGTATCAAGTACTCGCTAATCTGAATTGAATTTCAACAACTGTAT TAAATTTTAATACTTACTCTTCTCTTGCCACCGACCATGTTGGTAACGTTGACAAAACGA CGAACATAGAGAAGACGCTTGTAAGCACGGCCCTTGGGCTGCTTGGGCTTCTCTTGCTTT TCAACCTTGGGGGTTTGAGATTTAACCTGACAAAATGTTAATGCCTGTAAACTTCTACCT ATATTAAATACACACCTTTCCTGCACGAGCGAGAGATCCGTGAACTTTACCCATGTTGTT GGTAGTTGCTGCGTTACCATTCTTAGGGTATTGCGAAATATTCGAAATGTCAGCAAAAAA GCAGTCACGAATATGCTACCTGAAAGAGTAACAATGATTATTGACATTTGGTTGCTATTT GTTTACACCTTTTGTTTACTCAGGTTGAACAATGCAAGTTTCAAACAGCATGTCACTAAA CGACGAGGAAGACGATATTGAGTTTATTAACTATATTCCCTTGCTAGCAAGCCCGATCAA TTCATCTACTTGTTCAACAAGTATTCATGATAAATGTCCTTTCAAACAACACATTTCAGA AAACGGTCAAAATTTTGGTAGTGCTATATCTTCAAATATTTCCCAACGGAACTTCAAAAC CCTTAGAGCGTCGCATTTGTCTCAATATCGTGATTGTAACCGTGAAAACAATACAGAGGA TAAAAATGTTATCTCGACGGGGATTGCGGTCAATGAAAAATATCAATCTGTATTAAAATT AAAAGAAAAAGCGCCCCAAATTTCTTCAGCTGCTAAACGAAAGTCGTTTATAAAAGAACG TGGTATGTTGGCTAAGTGCTTTCTTGCGCGTTTAGAAGACGAAGTGTTTCAGGGACGGCT TACTTCTTCGCTTGAAAAGAAGGAGATTGGAATAGTTTGGTCCAAATCTTTTAGCACTAC TGCTGGTAGGGCTAACCTTAAGCGAAATAACAAGGACGCGCCACTTGGGAAAAAGACATA CGCATACATTGAATTATCTGATAAAGTAATCGTCACAAAAGAACGGCTTTACAATACTTT GGCCCATGAAGTTTGCCATTTAGCTTGTTGGATCATCGATAATGAAATGCAAAATCCACA TGGCGCCTGCTTCAAAGCATGGGGTAAACGAATTATGAACAATATGCCTTATATAGAAAT TACCTCTAAACACAATTATGATATTGACTTCAAGTATAAATGGCTGTGTATTAATGAAAA ATGCAACAAACTTTATGGAAGGCACTCAAAATCCATCAATCCACAGAAACAAGTTTGTAG GTTATGCAAATCACAAATTAAACAAATTTGCCCCAAAATAAAACAGCCCAATGCATTTCA AATTTTTTTAAAGGAGAATTCTAAGAGACTACGAAAGCTACACCCACACATCACTCACAA GGAACTTATGAAGAAACTTTCAGATGAGTACCACCGTACTAAAGATGCTAAACAAAACGT TTCAAAATCCGTTAGCCTTATCTCTTCAAGCGATTTGTAAATGTGAACGTAATAACATAA TCAATATCACATTACGGGCAGACGGTGCACCAATAATTTTTTCTCATGTAACAGACATTA AGTTTGTGTTTGCTCTAACCATCAATCGTTCTTCATTACTTATTTAGATAATATATTCTC AAGTACTAGATACTTAATCAACACTCAAGTCATTTTTTATTTAACAAAATGCAAATATAA TAATTATTATTTACCC
  • Download Fasta

  • Fasta :-

    MQVSNSMSLNDEEDDIEFINYIPLLASPINSSTCSTSIHDKCPFKQHISENGQNFGSAIS SNISQRNFKTLRASHLSQYRDCNRENNTEDKNVISTGIAVNEKYQSVLKLKEKAPQISSA AKRKSFIKERGMLAKCFLARLEDEVFQGRLTSSLEKKEIGIVWSKSFSTTAGRANLKRNN KDAPLGKKTYAYIELSDKVIVTKERLYNTLAHEVCHLACWIIDNEMQNPHGACFKAWGKR IMNNMPYIEITSKHNYDIDFKYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQIC PKIKQPNAFQIFLKENSKRLRKLHPHITHKELMKKLSDEYHRTKDAKQNVSKSVSLISSS DL

  • title: DNA binding site
  • coordinates: K304,P306,N307,F309,Q310,L313,K314,S317,R321,K334,S337,Y340
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC19G7.0464 SSSNISQRNF0.992unspSPBC19G7.04125 SAKRKSFIKE0.993unsp

SPBC19G7.04      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India