SPBC23G7.12c | 19S proteasome regulatory subunit Rpt6 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC23G7.12cOTHER0.9998740.0000190.000107
No Results

  • Fasta :-

    >SPBC23G7.12c MTEVLKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQ LLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLI KILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPK GILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS IIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP ALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVC TEAGMFALRERRVHVTQEDFELAVAKVLNKGDSGEMSLQKLFK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/76 Sequence name : 76 Sequence length : 403 VALUES OF COMPUTED PARAMETERS Coef20 : 3.622 CoefTot : 0.000 ChDiff : 2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.318 1.059 -0.145 0.416 MesoH : -0.912 0.130 -0.455 0.188 MuHd_075 : 11.118 10.036 2.661 2.345 MuHd_095 : 31.965 24.581 9.486 6.460 MuHd_100 : 25.042 17.463 7.224 4.433 MuHd_105 : 10.683 7.949 3.208 1.572 Hmax_075 : -0.700 10.500 -1.829 3.360 Hmax_095 : 10.300 14.300 1.065 4.380 Hmax_100 : 8.900 9.400 0.261 3.230 Hmax_105 : 6.417 8.750 0.146 3.022 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9448 0.0552 DFMC : 0.9655 0.0345
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 403 SPBC23G7.12c MTEVLKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNK 80 VLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEV 160 IELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 240 IIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAE 320 ARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDSGEMSLQK 400 LFK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC23G7.12c 6 -MTEVLK|TN 0.052 . SPBC23G7.12c 23 VQYYTQK|IQ 0.069 . SPBC23G7.12c 34 ELAILQK|TQ 0.054 . SPBC23G7.12c 39 QKTQNLR|RL 0.100 . SPBC23G7.12c 40 KTQNLRR|LE 0.094 . SPBC23G7.12c 45 RRLEAQR|NG 0.075 . SPBC23G7.12c 51 RNGLNAR|VR 0.074 . SPBC23G7.12c 53 GLNARVR|LL 0.110 . SPBC23G7.12c 56 ARVRLLR|EE 0.224 . SPBC23G7.12c 74 YVGEVIK|TM 0.064 . SPBC23G7.12c 78 VIKTMGK|NK 0.054 . SPBC23G7.12c 80 KTMGKNK|VL 0.069 . SPBC23G7.12c 84 KNKVLVK|VH 0.058 . SPBC23G7.12c 90 KVHPEGK|YV 0.087 . SPBC23G7.12c 102 SPDIDIK|EI 0.065 . SPBC23G7.12c 105 IDIKEIK|PN 0.065 . SPBC23G7.12c 109 EIKPNIR|VA 0.075 . SPBC23G7.12c 113 NIRVALR|ND 0.089 . SPBC23G7.12c 121 DSYQLIK|IL 0.062 . SPBC23G7.12c 126 IKILPNK|VD 0.058 . SPBC23G7.12c 138 SLMMVEK|IP 0.066 . SPBC23G7.12c 152 MVGGLEK|QI 0.063 . SPBC23G7.12c 155 GLEKQIK|EI 0.078 . SPBC23G7.12c 158 KQIKEIK|EV 0.071 . SPBC23G7.12c 166 VIELPVK|HP 0.058 . SPBC23G7.12c 180 LGIPQPK|GI 0.073 . SPBC23G7.12c 192 GPPGTGK|TL 0.059 . SPBC23G7.12c 197 GKTLLAR|AV 0.133 . SPBC23G7.12c 206 AHHTDCK|FI 0.079 . SPBC23G7.12c 209 TDCKFIR|VS 0.145 . SPBC23G7.12c 218 GSELVQK|YI 0.105 . SPBC23G7.12c 225 YIGEGSR|MV 0.115 . SPBC23G7.12c 228 EGSRMVR|EL 0.260 . SPBC23G7.12c 235 ELFVMAR|EH 0.090 . SPBC23G7.12c 254 DSIGSSR|SD 0.164 . SPBC23G7.12c 268 GDSEVQR|TM 0.108 . SPBC23G7.12c 284 DGFEATK|NI 0.062 . SPBC23G7.12c 287 EATKNIK|VI 0.058 . SPBC23G7.12c 294 VIMATNR|ID 0.073 . SPBC23G7.12c 304 LDPALLR|PG 0.069 . SPBC23G7.12c 307 ALLRPGR|ID 0.238 . SPBC23G7.12c 310 RPGRIDR|KI 0.296 . SPBC23G7.12c 311 PGRIDRK|IE 0.071 . SPBC23G7.12c 322 PPSAEAR|AE 0.119 . SPBC23G7.12c 327 ARAEILR|IH 0.097 . SPBC23G7.12c 331 ILRIHSR|SM 0.120 . SPBC23G7.12c 337 RSMNLTR|GI 0.116 . SPBC23G7.12c 342 TRGIDLK|SI 0.116 . SPBC23G7.12c 347 LKSIAEK|MN 0.105 . SPBC23G7.12c 357 ASGAELK|GV 0.107 . SPBC23G7.12c 369 AGMFALR|ER 0.080 . SPBC23G7.12c 371 MFALRER|RV 0.129 . SPBC23G7.12c 372 FALRERR|VH 0.353 . SPBC23G7.12c 386 FELAVAK|VL 0.073 . SPBC23G7.12c 390 VAKVLNK|GD 0.066 . SPBC23G7.12c 400 GEMSLQK|LF 0.061 . SPBC23G7.12c 403 SLQKLFK|-- 0.077 . ____________________________^_________________

  • Fasta :-

    >SPBC23G7.12c CGAAGAACCACCATAGAAGCTGAAGTAGTATAAAATGACGGAGGTGCTGAAGACTAACGT TTTACAGAGTAATGAGAACATAGTTCAGTATTATACCCAAAAAATTCAAGATGCTGAACT TGCTATTCTCCAAAAGACACAAAATTTACGACGATTAGAGGCTCAAAGAAACGGACTAAA TGCAAGAGTTCGCCTTCTAAGAGAGGAGATTCAGTTGCTTCAGGAACCCGGAAGTTATGT CGGTGAAGTGATTAAGACAATGGGAAAGAACAAAGTTCTAGTCAAAGTCCATCCTGAAGG CAAATATGTCGTTGATATTAGTCCAGATATTGATATTAAGGAGATTAAACCTAATATTCG TGTAGCCTTGAGGAACGATTCATACCAATTAATTAAAATCCTCCCCAACAAGGTTGATCC ACTTGTCTCTCTCATGATGGTCGAAAAAATTCCTGACTCCACTTATGAGATGGTTGGTGG TCTTGAAAAGCAAATCAAAGAAATTAAAGAAGTTATCGAATTACCAGTGAAGCATCCAGA ACTTTTTGAAAGCTTAGGTATTCCTCAGCCTAAAGGTATTCTTCTTTATGGTCCCCCGGG AACCGGTAAAACCTTGTTAGCTAGAGCAGTTGCCCACCATACCGATTGCAAATTCATCCG TGTCAGTGGATCAGAACTTGTTCAAAAGTATATTGGCGAAGGTAGTCGTATGGTTCGTGA ACTATTTGTTATGGCTCGTGAGCATGCTCCTTCTATTATTTTCATGGATGAGATCGACTC CATCGGCTCTTCACGATCTGATTCTAGTGGTGGAAGTGGCGATAGCGAAGTTCAGAGGAC CATGTTAGAGCTGTTGAATCAGCTTGATGGATTTGAAGCAACCAAAAATATCAAGGTCAT TATGGCCACTAACCGTATCGACATCTTGGATCCTGCTCTTCTTCGTCCAGGTCGTATTGA TCGTAAAATTGAATTCCCACCTCCATCTGCTGAGGCACGTGCCGAAATTTTGAGAATCCA TTCGAGGTCCATGAATTTAACACGTGGCATTGATTTGAAGAGTATAGCGGAGAAAATGAA CGGTGCTAGTGGTGCCGAGCTAAAAGGTGTTTGTACTGAAGCCGGTATGTTTGCATTGAG AGAAAGACGTGTTCATGTTACTCAAGAAGATTTTGAATTAGCTGTTGCTAAAGTATTAAA CAAGGGCGATTCTGGAGAAATGAGTTTACAAAAGCTTTTCAAGTAGATGATTTTACATAT GTATTAATGAATATGATTATAAGTTTAGTCAAATTGTTTGTACTTAATTGATTGTTGGTT ATTATATATTAC
  • Download Fasta

  • Fasta :-

    MTEVLKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQ LLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLI KILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPK GILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS IIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP ALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVC TEAGMFALRERRVHVTQEDFELAVAKVLNKGDSGEMSLQKLFK

  • title: ATP binding site
  • coordinates: P187,P188,G189,T190,G191,K192,T193,L194,D245,N293
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
SPBC23G7.12c253 SSIGSSRSDS0.995unspSPBC23G7.12c253 SSIGSSRSDS0.995unspSPBC23G7.12c253 SSIGSSRSDS0.995unspSPBC23G7.12c257 SSRSDSSGGS0.995unspSPBC23G7.12c258 SRSDSSGGSG0.993unspSPBC23G7.12c142 SKIPDSTYEM0.994unspSPBC23G7.12c211 SFIRVSGSEL0.995unsp

SPBC23G7.12c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India