SPBC2D10.09 | 3-hydroxyisobutyryl-CoA hydrolase snr1

_IDPredictionOTHERSPmTPCS_Position
SPBC2D10.09mTP0.4005790.0005640.598857CS pos: 50-51. KFY-ST. Pr: 0.8189
No Results

  • Fasta :-

    >SPBC2D10.09 MGLKLNISNDLKKSGFMLRQSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSSNDTVLY ESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIK AAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIAC EDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKH MFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIR ALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYM LKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKDLENYFKLPSEYNNGISFAAKGRRKTPL WNYKTYPYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/235 Sequence name : 235 Sequence length : 429 VALUES OF COMPUTED PARAMETERS Coef20 : 3.843 CoefTot : 0.335 ChDiff : 14 ZoneTo : 55 KR : 8 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.571 1.229 0.181 0.571 MesoH : 0.479 0.605 -0.105 0.370 MuHd_075 : 41.030 28.663 12.018 8.627 MuHd_095 : 37.186 24.271 11.053 7.855 MuHd_100 : 37.313 22.121 11.080 7.560 MuHd_105 : 36.328 22.571 11.533 7.617 Hmax_075 : 16.217 17.800 2.975 5.140 Hmax_095 : 11.725 12.250 0.661 3.036 Hmax_100 : 11.500 13.900 2.762 3.760 Hmax_105 : 12.367 14.467 2.468 3.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0554 0.9446 DFMC : 0.0224 0.9776 This protein is probably imported in chloroplast. f(Ser) = 0.2182 f(Arg) = 0.0545 CMi = 1.49068 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 429 SPBC2D10.09 MGLKLNISNDLKKSGFMLRQSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSSNDTVLYESKNGARIFTLNRPKVLNAI 80 NVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMN 160 GITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKH 240 MFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALKEYASNTSALAEFAKSTV 320 KTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKDLENYFKL 400 PSEYNNGISFAAKGRRKTPLWNYKTYPYL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC2D10.09 4 ---MGLK|LN 0.052 . SPBC2D10.09 12 NISNDLK|KS 0.073 . SPBC2D10.09 13 ISNDLKK|SG 0.158 . SPBC2D10.09 19 KSGFMLR|QS 0.080 . SPBC2D10.09 24 LRQSLLK|TS 0.060 . SPBC2D10.09 41 ASSTMSR|AF 0.102 . SPBC2D10.09 45 MSRAFIR|NP 0.086 . SPBC2D10.09 48 AFIRNPK|FY 0.160 . SPBC2D10.09 63 TVLYESK|NG 0.057 . SPBC2D10.09 67 ESKNGAR|IF 0.082 . SPBC2D10.09 73 RIFTLNR|PK 0.064 . SPBC2D10.09 75 FTLNRPK|VL 0.062 . SPBC2D10.09 91 IDSILPK|LV 0.099 . SPBC2D10.09 102 EESNLAK|VI 0.073 . SPBC2D10.09 107 AKVIILK|GN 0.077 . SPBC2D10.09 111 ILKGNGR|SF 0.158 . SPBC2D10.09 120 SSGGDIK|AA 0.071 . SPBC2D10.09 130 LSIQDGK|LP 0.059 . SPBC2D10.09 135 GKLPEVR|HA 0.133 . SPBC2D10.09 143 AFAQEYR|LS 0.085 . SPBC2D10.09 153 TLATYQK|PV 0.082 . SPBC2D10.09 177 AMHVPFR|IA 0.114 . SPBC2D10.09 206 ASFFFSR|LP 0.095 . SPBC2D10.09 223 LTSQIVK|GY 0.072 . SPBC2D10.09 229 KGYDCLR|TG 0.072 . SPBC2D10.09 239 ATHFVPK|HM 0.081 . SPBC2D10.09 248 FPHLEDR|LA 0.107 . SPBC2D10.09 259 NTSDISK|IN 0.076 . SPBC2D10.09 288 VMDVINK|CF 0.061 . SPBC2D10.09 292 INKCFCK|ND 0.061 . SPBC2D10.09 300 DTVDIIR|AL 0.076 . SPBC2D10.09 303 DIIRALK|EY 0.085 . SPBC2D10.09 317 ALAEFAK|ST 0.107 . SPBC2D10.09 321 FAKSTVK|TL 0.060 . SPBC2D10.09 326 VKTLYSK|SP 0.067 . SPBC2D10.09 336 SIAVTNR|LI 0.108 . SPBC2D10.09 339 VTNRLIK|SA 0.215 . SPBC2D10.09 343 LIKSAAK|WS 0.065 . SPBC2D10.09 362 VSYYMLK|QP 0.067 . SPBC2D10.09 377 NAQLITK|TK 0.058 . SPBC2D10.09 379 QLITKTK|NP 0.064 . SPBC2D10.09 382 TKTKNPK|WS 0.072 . SPBC2D10.09 385 KNPKWSK|SH 0.085 . SPBC2D10.09 392 SHEYHFK|DL 0.099 . SPBC2D10.09 399 DLENYFK|LP 0.064 . SPBC2D10.09 413 GISFAAK|GR 0.076 . SPBC2D10.09 415 SFAAKGR|RK 0.088 . SPBC2D10.09 416 FAAKGRR|KT 0.101 . SPBC2D10.09 417 AAKGRRK|TP 0.071 . SPBC2D10.09 424 TPLWNYK|TY 0.062 . ____________________________^_________________

  • Fasta :-

    >SPBC2D10.09 TAACAGTTTTGAGTACTCAATGCTATGCAACAAGTGGTTTAAGACTTTTAAAATCGACAA ACCCTGAGAAACTAAATTAATACTAAATATAGATTTTTTGAGACAAGTATTTGCCCAGCT AATGCATGGAAACCTACTTTGTTTTACGAATGGTCTTTTGTGATTTGTTATTAGTTCACA ATTAAGAACACACTTCGTTATAAAGTAACGTAGAAGAGACGTTAACCGTCTATGCAAAAA TAATCGGTGTTATTTAACTTGGTTAGCTTTCATGGGATTGAAATTAAATATCTCTAACGA TTTGAAAAAATCTGGATTTATGTTAAGGCAATCCTTACTTAAAACAAGTGTGTCAAATTT CCTTTCTTTGAATGCAAGTAGCACCATGTCTAGAGCGTTTATTCGAAATCCAAAATTTTA TAGCACTTCCTCAAATGATACAGTTTTATACGAGAGTAAAAATGGAGCAAGGATATTTAC TTTAAACAGGCCAAAAGTATTGAACGCTATCAACGTTGACATGATAGATTCAATCCTACC AAAGCTAGTTTCATTAGAAGAATCAAATCTGGCCAAGGTAATTATTCTTAAAGGAAATGG TCGCTCTTTTAGTTCGGGAGGTGACATTAAAGCTGCAGCACTTTCAATACAAGATGGAAA ATTACCTGAAGTTCGCCATGCATTTGCTCAAGAGTATCGATTAAGCCATACGTTAGCTAC ATACCAGAAACCAGTTGTGGCTTTGATGAATGGCATCACCATGGGAGGTGGATCTGGTTT GGCTATGCATGTTCCTTTCCGTATTGCGTGTGAAGATACGATGTTTGCTATGCCAGAAAC CGGAATTGGCTATTTTACTGACGTGGCTGCCAGTTTCTTCTTCAGTAGACTACCAGGATA CTTTGGAACTTATCTGGGATTGACATCTCAAATCGTAAAAGGATATGATTGCCTGCGTAC TGGAATTGCAACTCATTTCGTTCCGAAGCATATGTTTCCTCATTTGGAGGACAGGCTTGC AGAGTTAAACACGTCTGATATTTCTAAAATCAATAATACAATCCTGGAATTTGCCGAATT TGCTAGCAGTTCACCACCCACTTTTACTCCAGACGTTATGGATGTCATTAATAAATGCTT CTGCAAAAATGATACCGTTGATATTATTCGTGCGTTAAAAGAATATGCTTCAAACACTAG TGCTTTAGCGGAATTTGCAAAATCTACCGTTAAAACATTGTATAGCAAATCTCCGACTTC AATTGCTGTTACCAATCGACTTATTAAGTCTGCTGCTAAGTGGAGTATATCTGAAGCATT TTACTATGATCATATCGTTTCCTATTATATGCTTAAACAGCCTGATTTTGTTGAAGGTGT TAATGCTCAACTTATTACAAAGACCAAAAATCCAAAATGGAGCAAATCCCATGAATATCA CTTTAAAGATTTAGAAAACTATTTCAAGTTGCCTTCAGAATACAATAATGGGATATCTTT TGCTGCAAAAGGAAGACGTAAAACTCCCCTTTGGAATTATAAGACTTATCCTTATTTATA ATCCCAAAGGTTACATAAATTAAATATTGTTCTTTATGTCTACTAAGTTTTTTCAGTATT ATAATAAGATGATTTATTTCAAAGACCCTG
  • Download Fasta

  • Fasta :-

    MGLKLNISNDLKKSGFMLRQSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSSNDTVLY ESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIK AAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIAC EDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKH MFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIR ALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYM LKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKDLENYFKLPSEYNNGISFAAKGRRKTPL WNYKTYPYL

  • title: substrate binding site
  • coordinates: L77,A79,R111,S115,G116,G117,D118,I119,I162,M164,G165,G166,P188,E189,I192
No Results
No Results
IDSitePeptideScoreMethod
SPBC2D10.09115 SRSFSSGGDI0.993unsp

SPBC2D10.09      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India