SPBC336.13c | mitochondrial inner membrane peptidase complex catalytic subunit 2 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC336.13cOTHER0.8115620.1060500.082388
No Results

  • Fasta :-

    >SPBC336.13c MANPFVRNQSFKSVFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQR DRVLLWKWNKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHV WVEGDEQFHSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHEGFRKNAVFLSGKRSVK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/878 Sequence name : 878 Sequence length : 180 VALUES OF COMPUTED PARAMETERS Coef20 : 4.307 CoefTot : -0.673 ChDiff : 9 ZoneTo : 32 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.512 1.800 0.201 0.666 MesoH : -1.000 0.145 -0.527 0.164 MuHd_075 : 50.139 35.449 14.433 11.597 MuHd_095 : 17.478 16.459 5.580 4.785 MuHd_100 : 16.419 10.817 4.054 4.128 MuHd_105 : 18.360 14.422 4.725 5.011 Hmax_075 : 20.600 21.200 3.521 6.820 Hmax_095 : 13.037 15.837 1.592 5.486 Hmax_100 : 0.500 14.100 3.418 2.540 Hmax_105 : 1.517 21.200 3.709 2.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1019 0.8981 DFMC : 0.2431 0.7569 This protein is probably imported in mitochondria. f(Ser) = 0.0625 f(Arg) = 0.0313 CMi = 0.54945 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 180 SPBC336.13c MANPFVRNQSFKSVFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLLWKWNKDYKRGDVVIL 80 RSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSIDSNKFGPVSTGLITAKVIAILFPFSRAGR 160 IDHEGFRKNAVFLSGKRSVK 240 ................................................................................ 80 ................................................................................ 160 .................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC336.13c 7 MANPFVR|NQ 0.093 . SPBC336.13c 12 VRNQSFK|SV 0.166 . SPBC336.13c 17 FKSVFFK|NL 0.087 . SPBC336.13c 45 VGTIEGR|SM 0.112 . SPBC336.13c 48 IEGRSMK|PA 0.186 . SPBC336.13c 60 ETNMLQR|DR 0.081 . SPBC336.13c 62 NMLQRDR|VL 0.070 . SPBC336.13c 67 DRVLLWK|WN 0.066 . SPBC336.13c 70 LLWKWNK|DY 0.073 . SPBC336.13c 73 KWNKDYK|RG 0.067 . SPBC336.13c 74 WNKDYKR|GD 0.210 . SPBC336.13c 81 GDVVILR|SP 0.112 . SPBC336.13c 92 PEELLVK|RV 0.075 . SPBC336.13c 93 EELLVKR|VL 0.191 . SPBC336.13c 103 VEYDIMK|TR 0.056 . SPBC336.13c 105 YDIMKTR|PP 0.076 . SPBC336.13c 108 MKTRPPK|KL 0.136 . SPBC336.13c 109 KTRPPKK|LS 0.090 . SPBC336.13c 135 HSIDSNK|FG 0.068 . SPBC336.13c 147 TGLITAK|VI 0.068 . SPBC336.13c 157 ILFPFSR|AG 0.082 . SPBC336.13c 160 PFSRAGR|ID 0.334 . SPBC336.13c 167 IDHEGFR|KN 0.084 . SPBC336.13c 168 DHEGFRK|NA 0.069 . SPBC336.13c 176 AVFLSGK|RS 0.058 . SPBC336.13c 177 VFLSGKR|SV 0.234 . SPBC336.13c 180 SGKRSVK|-- 0.139 . ____________________________^_________________

  • Fasta :-

    >SPBC336.13c GTTGTTAATTTAAGTAAATAATAGTTTTCGCTATAATAATATTAGAAGGAAGCTAAGCTT AATGTGGTTTTGAATTACCTACTGCAACACACCGTATTGAAACAAAAACGATCAGGAATA GAAGCCTGACACTTATCAGATAAAATTCATTAATACGTTTTCCTGGTTTAATTATTAATT ACGGAAACTCCCATGCTTGTTAAGGTACATACAGACGGTTAATCATAAACTTCTTAGAGG AGAGAGTTTAGCAGTTGTCCTCAAAAAATGGCAAACCCTTTCGTTCGAAATCAATCTTTT AAATCAGTATTTTTTAAAAATTTAGTCGGAATTACCCTATGGGTACCCGTATTAATGTTC GTTGAACAACATGTAGTCAGCGTCGGTACAATTGAAGGTAGATCTATGAAACCAGCCTTT AACCCTGAGACAAACATGCTGCAGAGAGATAGGGTACTACTTTGGAAATGGAATAAGGAT TACAAAAGAGGAGATGTAGTTATACTACGCTCTCCAGAAAACCCAGAGGAACTATTGGTA AAAAGAGTTCTAGGAGTAGAATACGATATCATGAAAACGAGACCTCCTAAAAAGTTGTCA TTAGTACCCGTTCCCGAGGGACATGTGTGGGTCGAAGGCGATGAACAATTTCATTCTATT GATAGTAACAAATTTGGCCCAGTATCGACAGGACTCATCACTGCCAAAGTGATTGCAATT TTGTTTCCCTTCTCTCGTGCAGGGCGTATTGATCATGAAGGTTTCCGAAAGAATGCAGTG TTTTTAAGTGGAAAACGTTCTGTTAAGTAAGCTGCACCACAGTGAACCTGTTTCCTTGAC AGTTTAGTTCCATGCTGGTTGGTGCTTATTTACATTTCTTTTAAGGAACACGTTATCCTT AAATTTAATTTATTTCGACGCGTCGCGTTCTATATATGACGTCATTAATATGTCTATCTA TTTACCTATTTGAAAAAGATGGAAGTTGGAAGCTAC
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  • Fasta :-

    MANPFVRNQSFKSVFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQR DRVLLWKWNKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHV WVEGDEQFHSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHEGFRKNAVFLSGKRSVK

  • title: Catalytic site
  • coordinates: S46,K92
No Results
No Results
IDSitePeptideScoreMethod
SPBC336.13c46 SIEGRSMKPA0.995unsp

SPBC336.13c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India