SPBC365.08c | Der1-like (degradation in the ER) family (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC365.08cOTHER0.9992760.0000300.000694
No Results

  • Fasta :-

    >SPBC365.08c MASEFSGQIQELLSRIPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRL FTNYLYAGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLG SALNQSLAAAIAYNWSLFNSFSKIQFLFGFHVQGKYLPYVLLGFSFLTGGLPSLVVLGFG IISAMIVNFFDSIHTPVVHRSNSPKLNSQKVSGTFIGKGKKLGT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/536 Sequence name : 536 Sequence length : 224 VALUES OF COMPUTED PARAMETERS Coef20 : 3.811 CoefTot : 0.253 ChDiff : 11 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.188 2.394 0.436 0.856 MesoH : 1.079 1.125 -0.002 0.534 MuHd_075 : 13.546 5.726 3.439 3.365 MuHd_095 : 37.846 27.740 9.214 8.574 MuHd_100 : 37.315 29.502 10.308 8.159 MuHd_105 : 31.286 26.436 9.841 6.481 Hmax_075 : 4.800 6.067 -0.363 3.383 Hmax_095 : 17.762 18.813 3.121 6.633 Hmax_100 : 20.500 23.100 4.018 7.460 Hmax_105 : 17.700 20.533 3.892 6.640 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5599 0.4401 DFMC : 0.8613 0.1387
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 224 SPBC365.08c MASEFSGQIQELLSRIPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRLFTNYLYAGTGFDFIMNIYFF 80 YQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLGSALNQSLAAAIAYNWSLFNSFSKIQFLFGFHVQGKYLPYV 160 LLGFSFLTGGLPSLVVLGFGIISAMIVNFFDSIHTPVVHRSNSPKLNSQKVSGTFIGKGKKLGT 240 ................................................................................ 80 ................................................................................ 160 ................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC365.08c 15 IQELLSR|IP 0.065 . SPBC365.08c 21 RIPPVTR|YI 0.090 . SPBC365.08c 53 HYPLVVR|QK 0.074 . SPBC365.08c 55 PLVVRQK|QW 0.071 . SPBC365.08c 59 RQKQWYR|LF 0.086 . SPBC365.08c 94 ENFVFAR|NA 0.140 . SPBC365.08c 97 VFARNAK|KY 0.135 . SPBC365.08c 98 FARNAKK|YI 0.111 . SPBC365.08c 105 YIIYLVK|VA 0.058 . SPBC365.08c 143 LFNSFSK|IQ 0.066 . SPBC365.08c 155 GFHVQGK|YL 0.084 . SPBC365.08c 200 HTPVVHR|SN 0.190 . SPBC365.08c 205 HRSNSPK|LN 0.120 . SPBC365.08c 210 PKLNSQK|VS 0.068 . SPBC365.08c 218 SGTFIGK|GK 0.060 . SPBC365.08c 220 TFIGKGK|KL 0.086 . SPBC365.08c 221 FIGKGKK|LG 0.075 . ____________________________^_________________

  • Fasta :-

    >SPBC365.08c GTTCGATACGTTAGTAATTGTAGCACAATTCCGTATACAACCTTGCCTGAACAAACATAA TCAGTTAAGACATGGCTTCGGAATTTTCCGGTCAAATACAAGAATTGCTGTCTAGAATAC CTCCTGTAACAAGGTATATTCTGCTTGGAACAGCAGCTACCACAATTTTAACTTTATGTC AACTTCTTTCACCTTCGATGCTAGTTCTGCATTATCCGTTAGTCGTTCGTCAGAAACAAT GGTATCGTTTATTTACTAATTATCTCTATGCTGGAACTGGATTTGATTTTATCATGAACA TTTATTTTTTTTACCAATATAGCACATACCTGGAAAACTTTGTCTTTGCTAGGAATGCAA AAAAATACATTATTTATTTAGTTAAAGTTGCTCTTTTAATTGATGCATTTTCCTTGATCT CAGGACTTGGAAGCGCGTTAAATCAATCGCTTGCCGCTGCCATTGCTTATAATTGGTCTT TGTTTAACTCATTTTCCAAAATCCAGTTTTTGTTTGGTTTTCATGTTCAAGGCAAATATT TGCCATATGTTCTTCTTGGCTTCAGCTTTCTAACCGGAGGTCTTCCATCTCTAGTAGTAT TGGGTTTTGGTATTATCTCTGCAATGATCGTCAATTTTTTTGATTCGATTCACACTCCTG TTGTCCATCGCTCCAACTCTCCCAAATTGAATTCCCAAAAGGTGTCTGGAACATTCATTG GGAAGGGCAAAAAGTTAGGCACTTAATTTTTCATATTGATGATTTCATTAAGTGCGTTAA AAACAGTCGATACGTGTTCGAAATTTTTATCAATATTTCTTACTCCATTCATCACCTGTC GAGTCTGGTAGGCAAACTTTCACAATTTTCAATAATGCATCAATGAGTTCCACTATTTCA AATTTTTGATGAATAATATTTCACTTCTTTCCTGTACGAACACGACGGCTTTCTCATTCA TATGCTGATAGCTAAAAATCCGAACTACACTAATTTGTTGAAATGTAGCCCTTTATTATA ATGTTCTTATCTAAATTTCTTTTTTTATCCTTCACCAATAGACTAAAGTAAAC
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  • Fasta :-

    MASEFSGQIQELLSRIPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQWYRL FTNYLYAGTGFDFIMNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLG SALNQSLAAAIAYNWSLFNSFSKIQFLFGFHVQGKYLPYVLLGFSFLTGGLPSLVVLGFG IISAMIVNFFDSIHTPVVHRSNSPKLNSQKVSGTFIGKGKKLGT

    No Results
No Results
No Results
IDSitePeptideScoreMethod
SPBC365.08c203 SHRSNSPKLN0.995unsp

SPBC365.08c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India