SPBC4.07c | 19S proteasome regulatory subunit Rpt2

UniProt_ID: P36612

Computed_GO_Component_IDs: GO:0005737
Computed_GO_Components: cytoplasm
Computed_GO_Function_IDs: GO:0005524 GO:0016787
Computed_GO_Functions: ATP binding hydrolase activity
Computed_GO_Process_IDs: GO:0030163
Computed_GO_Processes: protein catabolic process
Curated_GO_Component_IDs: GO:0005829 GO:0000790 GO:0005634 GO:0005838 GO:0008540
Curated_GO_Components: cytosol nuclear chromatin nucleus proteasome regulatory particle proteasome regulatory particle, base subcomplex
Curated_GO_Function_IDs: GO:0017025 GO:0036402 GO:0005515
Curated_GO_Functions: TBP-class protein binding proteasome-activating ATPase activity protein binding
Curated_GO_Processes: positive regulation of mitotic metaphase/anaphase transition proteasomal protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	SPBC4.07c	OTHER	0.999992	0.000001	0.000007

No Results

Fasta :-
>SPBC4.07c MGQAQSGNFSNFGDGANGDNKKDQKKDKPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVI PTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLE EIIDDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVM KLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL LAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKR YDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILF ENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMR VVMDDFRQAREKVLKTKDEGGPAGGLYI
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/582 Sequence name : 582 Sequence length : 448 VALUES OF COMPUTED PARAMETERS Coef20 : 2.655 CoefTot : -0.963 ChDiff : -10 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.994 1.518 0.058 0.498 MesoH : -0.650 0.331 -0.395 0.241 MuHd_075 : 8.466 3.181 1.932 0.694 MuHd_095 : 16.887 13.579 2.990 3.505 MuHd_100 : 20.129 13.778 4.267 4.029 MuHd_105 : 20.100 11.546 5.151 3.800 Hmax_075 : 1.488 -1.838 -2.577 1.470 Hmax_095 : 5.337 4.100 -1.853 2.739 Hmax_100 : 10.300 5.000 -0.237 3.770 Hmax_105 : 13.533 6.767 1.542 4.433 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9937 0.0063 DFMC : 0.9916 0.0084

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 448 SPBC4.07c MGQAQSGNFSNFGDGANGDNKKDQKKDKPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLL 80 MEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHH 160 KAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 240 LAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLN 320 QLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGA 400 EIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAGGLYI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC4.07c 21 GANGDNK|KD 0.061 . SPBC4.07c 22 ANGDNKK|DQ 0.106 . SPBC4.07c 25 DNKKDQK|KD 0.060 . SPBC4.07c 26 NKKDQKK|DK 0.162 . SPBC4.07c 28 KDQKKDK|PK 0.069 . SPBC4.07c 30 QKKDKPK|YE 0.078 . SPBC4.07c 38 EPPVPTR|TG 0.084 . SPBC4.07c 41 VPTRTGR|RK 0.296 . SPBC4.07c 42 PTRTGRR|KK 0.116 . SPBC4.07c 43 TRTGRRK|KK 0.119 . SPBC4.07c 44 RTGRRKK|KA 0.490 . SPBC4.07c 45 TGRRKKK|AQ 0.441 . SPBC4.07c 55 GPDASAK|LP 0.073 . SPBC4.07c 64 TVIPTTR|CR 0.081 . SPBC4.07c 66 IPTTRCR|LR 0.067 . SPBC4.07c 68 TTRCRLR|LL 0.099 . SPBC4.07c 71 CRLRLLK|MQ 0.110 . SPBC4.07c 74 RLLKMQR|IH 0.091 . SPBC4.07c 91 YVQNQER|LK 0.094 . SPBC4.07c 93 QNQERLK|PQ 0.062 . SPBC4.07c 98 LKPQDER|TQ 0.079 . SPBC4.07c 103 ERTQEER|NR 0.087 . SPBC4.07c 105 TQEERNR|VD 0.095 . SPBC4.07c 110 NRVDEIR|GT 0.129 . SPBC4.07c 147 IMSFVDK|DM 0.081 . SPBC4.07c 161 SVLLHHK|AM 0.065 . SPBC4.07c 181 PMINVMK|LD 0.060 . SPBC4.07c 184 NVMKLDK|AP 0.059 . SPBC4.07c 204 SQIQEIK|EA 0.063 . SPBC4.07c 223 YEEMGIK|PP 0.060 . SPBC4.07c 226 MGIKPPK|GV 0.090 . SPBC4.07c 238 GAPGTGK|TL 0.058 . SPBC4.07c 243 GKTLLAK|AV 0.080 . SPBC4.07c 255 TSATFLR|VV 0.217 . SPBC4.07c 264 GSELIQK|YL 0.087 . SPBC4.07c 271 YLGDGPR|LV 0.125 . SPBC4.07c 274 DGPRLVR|QL 0.164 . SPBC4.07c 299 IDAIGTK|RY 0.063 . SPBC4.07c 300 DAIGTKR|YD 0.193 . SPBC4.07c 309 AQSGAER|EI 0.089 . SPBC4.07c 313 AEREIQR|TM 0.085 . SPBC4.07c 330 GFDTSQR|DI 0.119 . SPBC4.07c 333 TSQRDIK|VI 0.158 . SPBC4.07c 340 VIMATNR|IS 0.078 . SPBC4.07c 350 LDPALIR|PG 0.073 . SPBC4.07c 353 ALIRPGR|ID 0.273 . SPBC4.07c 356 RPGRIDR|KI 0.240 . SPBC4.07c 357 PGRIDRK|IL 0.084 . SPBC4.07c 368 NPDEATK|RK 0.057 . SPBC4.07c 369 PDEATKR|KI 0.232 . SPBC4.07c 370 DEATKRK|IF 0.095 . SPBC4.07c 378 FTIHTSK|MN 0.058 . SPBC4.07c 394 EELIQCK|DD 0.061 . SPBC4.07c 403 LSGAEIK|AI 0.065 . SPBC4.07c 415 AGLLALR|ER 0.060 . SPBC4.07c 417 LLALRER|RM 0.091 . SPBC4.07c 418 LALRERR|MR 0.226 . SPBC4.07c 420 LRERRMR|VV 0.471 . SPBC4.07c 427 VVMDDFR|QA 0.087 . SPBC4.07c 430 DDFRQAR|EK 0.208 . SPBC4.07c 432 FRQAREK|VL 0.072 . SPBC4.07c 435 AREKVLK|TK 0.084 . SPBC4.07c 437 EKVLKTK|DE 0.083 . ____________________________^_________________

Fasta :-
>SPBC4.07c GCTAGATATTACCAATACCAGATCACTTTCACTGAGAGTATCGATCCAAAAAATGGGACA AGCACAATCTGGGAATTTTTCTAATTTCGGCGATGGTGCCAACGGCGACAATAAAAAAGA CCAAAAGAAAGATAAGCCCAAATACGAACCTCCAGTTCCCACTCGAACTGGTCGTCGTAA GAAGAAGGCTCAAAGTGGTCCTGATGCATCGGCAAAACTACCTACTGTTATCCCAACGAC TCGTTGTCGTTTAAGGTTGTTAAAAATGCAAAGAATCCACGATCATTTGCTTATGGAAGA AGAGTATGTGCAAAACCAGGAACGTCTTAAGCCACAGGATGAACGAACTCAGGAAGAACG CAATCGTGTAGATGAAATTCGTGGTACTCCAATGTCTGTAGGAACTTTAGAGGAAATTAT AGACGACGATCATGCCATCGTTTCCACAGCTGGACCAGAGTACTATGTTTCCATCATGTC ATTTGTCGATAAAGACATGTTAGAGCCTGGTTGCAGTGTACTTCTCCATCACAAAGCCAT GAGTATAGTAGGCTTACTTCTTGATGATACCGATCCAATGATTAATGTTATGAAACTCGA CAAAGCACCTACAGAAAGTTATGCCGATATTGGTGGTCTTGAATCTCAAATTCAAGAGAT CAAAGAGGCTGTAGAGCTTCCTCTTACCCATCCTGAACTCTATGAGGAAATGGGCATAAA ACCCCCTAAAGGTGTCATTTTATATGGTGCTCCCGGTACTGGTAAAACTTTACTAGCGAA AGCTGTTGCTAATCAAACTTCTGCTACGTTCTTGCGTGTCGTTGGTTCTGAACTTATTCA AAAATATTTAGGTGATGGTCCCCGTCTTGTGAGACAATTATTTAATGCTGCCGAAGAACA TTCGCCCTCTATTGTTTTTATTGATGAAATTGATGCTATAGGTACAAAGCGTTACGATGC CCAGTCGGGTGCTGAACGAGAAATTCAACGTACTATGCTTGAGTTACTCAATCAGTTGGA TGGATTCGATACGAGTCAGCGTGATATTAAGGTTATTATGGCTACTAACCGTATCAGCGA TCTTGATCCGGCTCTTATTCGTCCAGGTCGTATTGACCGCAAAATTCTTTTCGAGAATCC TGATGAAGCTACGAAACGTAAAATTTTTACCATTCACACTTCCAAGATGAATTTGGGCGA GGATGTTAATTTAGAAGAGTTAATTCAATGCAAAGATGATTTATCTGGTGCAGAAATTAA AGCAATCGTTTCTGAAGCTGGTTTGCTTGCTCTGCGTGAACGCCGAATGCGAGTTGTTAT GGACGACTTTCGGCAAGCTCGTGAAAAGGTTTTAAAAACGAAGGACGAAGGTGGACCTGC TGGTGGTCTTTATATCTAAGTCCAACTTTGGTTATGACTAGTTTTACTCGCATAATGGCA ATACTTCTTTTTATCCATACTTGCCATTGACTAAATAATTTCCAGTTCCTGTTTAGTTTC TACGAATATCTGTATTTCC
Download Fasta

Fasta :-

MGQAQSGNFSNFGDGANGDNKKDQKKDKPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVI PTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLE EIIDDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVM KLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL LAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKR YDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILF ENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMR VVMDDFRQAREKVLKTKDEGGPAGGLYI

Extended AAA-ATPase domain

title: ATP binding site
coordinates: A233,P234,G235,T236,G237,K238,T239,L240,D291,N339

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	SPBC4.07c	S	48	0.515	0.052	SPBC4.07c	T	39	0.514	0.057

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	SPBC4.07c	S	48	0.515	0.052	SPBC4.07c	T	39	0.514	0.057

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	SPBC4.07c	328 S	GFDTSQRDI	0.996	unsp	SPBC4.07c	328 S	GFDTSQRDI	0.996	unsp	SPBC4.07c	328 S	GFDTSQRDI	0.996	unsp	SPBC4.07c	342 S	TNRISDLDP	0.991	unsp	SPBC4.07c	48 S	KKAQSGPDA	0.996	unsp	SPBC4.07c	85 Y	MEEEYVQNQ	0.991	unsp

SPBC4.07c | 19S proteasome regulatory subunit Rpt2

ID's

UniProt_ID: P36612

GEO Functions

Computed_GO_Component_IDs: GO:0005737

Computed_GO_Components: cytoplasm

Computed_GO_Function_IDs: GO:0005524 GO:0016787

Computed_GO_Functions: ATP binding hydrolase activity

Computed_GO_Process_IDs: GO:0030163

Computed_GO_Processes: protein catabolic process

Curated_GO_Component_IDs: GO:0005829 GO:0000790 GO:0005634 GO:0005838 GO:0008540

Curated_GO_Components: cytosol nuclear chromatin nucleus proteasome regulatory particle proteasome regulatory particle, base subcomplex

Curated_GO_Function_IDs: GO:0017025 GO:0036402 GO:0005515

Curated_GO_Functions: TBP-class protein binding proteasome-activating ATPase activity protein binding

Curated_GO_Processes: positive regulation of mitotic metaphase/anaphase transition proteasomal protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Extended AAA-ATPase domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

SPBC4.07c

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India