SPBC646.16 | 20S proteasome complex subunit alpha 1 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPBC646.16OTHER0.9993200.0001120.000568
No Results

  • Fasta :-

    >SPBC646.16 MSQARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID ASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKR FKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIEAHLQSI AEKD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/776 Sequence name : 776 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 4.196 CoefTot : -0.017 ChDiff : 0 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.306 1.294 0.220 0.525 MesoH : -0.540 0.304 -0.341 0.184 MuHd_075 : 21.842 5.619 4.606 3.797 MuHd_095 : 31.472 12.625 6.811 6.796 MuHd_100 : 28.044 14.973 5.861 7.312 MuHd_105 : 23.833 16.541 4.585 7.355 Hmax_075 : 4.025 1.925 -1.226 2.511 Hmax_095 : 9.600 7.200 0.319 3.870 Hmax_100 : 10.200 7.300 0.355 4.000 Hmax_105 : 8.300 9.900 0.085 4.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7183 0.2817 DFMC : 0.7624 0.2376
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 SPBC646.16 MSQARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTG 80 SIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIG 160 YKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIEAHLQSI 240 AEKD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBC646.16 5 --MSQAR|GF 0.129 . SPBC646.16 9 QARGFDR|TI 0.097 . SPBC646.16 19 VFSPEGR|LY 0.086 . SPBC646.16 28 QVEYAFK|AF 0.065 . SPBC646.16 43 SVGVTGK|NC 0.071 . SPBC646.16 52 ACVISQK|KV 0.075 . SPBC646.16 53 CVISQKK|VP 0.084 . SPBC646.16 57 QKKVPDK|LI 0.079 . SPBC646.16 65 IDASTVK|HV 0.093 . SPBC646.16 72 HVFPITK|GI 0.089 . SPBC646.16 86 GSIADAR|AQ 0.081 . SPBC646.16 91 ARAQVSR|AR 0.126 . SPBC646.16 93 AQVSRAR|SE 0.125 . SPBC646.16 102 AAEFEYK|NG 0.062 . SPBC646.16 114 PCDVLAK|RM 0.058 . SPBC646.16 115 CDVLAKR|MA 0.222 . SPBC646.16 126 AQVSTQR|AA 0.092 . SPBC646.16 130 TQRAAMR|PL 0.163 . SPBC646.16 151 IGPSLFK|LD 0.054 . SPBC646.16 162 GFYIGYK|AT 0.086 . SPBC646.16 169 ATSAGPK|QT 0.090 . SPBC646.16 179 TINWLEK|RF 0.061 . SPBC646.16 180 INWLEKR|FK 0.328 . SPBC646.16 182 WLEKRFK|KD 0.063 . SPBC646.16 183 LEKRFKK|DG 0.419 . SPBC646.16 210 SLSTDFK|ST 0.116 . SPBC646.16 223 GVVEDDK|PF 0.055 . SPBC646.16 226 EDDKPFR|VL 0.096 . SPBC646.16 243 LQSIAEK|D- 0.090 . ____________________________^_________________

  • Fasta :-

    >SPBC646.16 CAATTACTAAGTTTCAGGTTATAAACCTACTACTACCAACTACGATGTCTCAAGCACGCG GATTTGATAGGACAATTACCGTCTTCTCCCCTGAAGGACGTCTTTATCAAGTTGAATATG CATTCAAAGCGTTTAATAACGCAGGGATTACATCTGTTGGTGTAACAGGTAAAAATTGTG CATGTGTAATCTCCCAAAAAAAAGTACCTGACAAACTTATTGATGCCTCTACCGTTAAAC ATGTTTTTCCTATTACTAAAGGAATCGGCTGTGTTATGACAGGCTCTATCGCGGACGCTC GCGCGCAAGTTAGCCGGGCTCGAAGTGAGGCTGCTGAATTTGAATACAAAAATGGATACC CTATGCCCTGCGATGTTCTAGCCAAAAGAATGGCTAATATTGCTCAAGTTTCTACCCAAC GTGCTGCTATGAGGCCTTTGGGAGTTGCAATGACCCTTGTAGCTGTGGATGATGAGATTG GACCTTCCCTATTTAAGCTCGACCCTGCTGGTTTCTATATTGGTTATAAAGCTACCAGTG CTGGACCAAAGCAAACGGAAACTATAAACTGGCTAGAAAAACGATTCAAAAAGGACGGAA TACCTTCAAACCTTACTGATACCGTTGAAACCGGAATTCAGGCTTTAATGAGTAGTTTAA GTACTGATTTTAAGTCTACTGAGCTTCAGATTGGTGTTGTTGAAGACGACAAACCATTTC GAGTTTTATCAGTAGAAGAAATAGAAGCCCATTTACAAAGTATTGCCGAAAAGGATTGAT TGTTTAGACCGGTTTGAATGAAAGTTTTACTATATACCTGTAATTTCGATTGGCATCTTT ACGTTCTTACTTTCCTTTATTCCTCCCTTTTCTTGAAGGGTTTATTTGATTTATAAAATC AGTATATGCCATGTTACGTCCTTCCTGATGAAAACTTTTCGCTTTTTCATAGAGTAAGAT ATGTTAGAGAAATATATTTCTTATTGAACTTGACATTAATATTTCATTGATTTGTGCGTC GTAA
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  • Fasta :-

    MSQARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID ASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKR FKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIEAHLQSI AEKD

  • title: active site
  • coordinates: I35,Q51,K53,H66,P168
No Results
No Results
IDSitePeptideScoreMethod
SPBC646.16229 SFRVLSVEEI0.997unsp

SPBC646.16      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India