SPBP4H10.10 | rhomboid family protease

_IDPredictionOTHERSPmTPCS_Position
SPBP4H10.10OTHER0.6811500.0025210.316330
No Results

  • Fasta :-

    >SPBP4H10.10 MCISSSSLLCGINSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPS LPLREHLPLKNVYSQVPLLPVWSPIPKGPRRFLLPPKFHYRLSPPPGEFKSSPRVAIMVA VIVCLVNGVVFWHWDLARDEAIRLHDFKRFRFMMTHAQASLFNLYEGRWWTLVVSIFSHQ NLAHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVALQRMMNEENPFATLPNG PTKVWDLLFPKGPYPPISRPALYLGSNPEYGPIIRTATFVPQSWATGLLGASGAVYATAA IFACLFPYTEFFLFFVYPVKAGIFMPLDFIAEYVLCLLNYEKKFHVAFDAHVSGTFFGVV SSLFLLPAMWKRRSLYCVGIVKKRIWSNKAKA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/396 Sequence name : 396 Sequence length : 392 VALUES OF COMPUTED PARAMETERS Coef20 : 4.439 CoefTot : 0.528 ChDiff : 21 ZoneTo : 54 KR : 5 DE : 0 CleavSite : 59 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.888 0.511 0.863 MesoH : 0.915 1.181 0.034 0.535 MuHd_075 : 27.722 18.448 7.520 6.205 MuHd_095 : 27.294 19.729 8.474 5.744 MuHd_100 : 31.870 25.868 8.832 8.142 MuHd_105 : 41.587 26.010 8.483 10.463 Hmax_075 : 10.400 18.200 1.306 5.840 Hmax_095 : 14.500 20.100 3.246 5.171 Hmax_100 : 15.700 20.800 3.861 6.140 Hmax_105 : 13.700 21.525 3.787 5.215 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2644 0.7356 DFMC : 0.3115 0.6885 This protein is probably imported in chloroplast. f(Ser) = 0.2407 f(Arg) = 0.0741 CMi = 1.38593 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 392 SPBP4H10.10 MCISSSSLLCGINSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPLLP 80 VWSPIPKGPRRFLLPPKFHYRLSPPPGEFKSSPRVAIMVAVIVCLVNGVVFWHWDLARDEAIRLHDFKRFRFMMTHAQAS 160 LFNLYEGRWWTLVVSIFSHQNLAHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVALQRMMNEENPFATLPNG 240 PTKVWDLLFPKGPYPPISRPALYLGSNPEYGPIIRTATFVPQSWATGLLGASGAVYATAAIFACLFPYTEFFLFFVYPVK 320 AGIFMPLDFIAEYVLCLLNYEKKFHVAFDAHVSGTFFGVVSSLFLLPAMWKRRSLYCVGIVKKRIWSNKAKA 400 ................................................P............................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPBP4H10.10 16 CGINSLK|YA 0.070 . SPBP4H10.10 21 LKYASNR|VG 0.083 . SPBP4H10.10 39 SSLNIFR|PY 0.076 . SPBP4H10.10 46 PYVIFSR|SH 0.085 . SPBP4H10.10 49 IFSRSHR|SL 0.648 *ProP* SPBP4H10.10 64 SPSLPLR|EH 0.093 . SPBP4H10.10 70 REHLPLK|NV 0.084 . SPBP4H10.10 87 VWSPIPK|GP 0.067 . SPBP4H10.10 90 PIPKGPR|RF 0.060 . SPBP4H10.10 91 IPKGPRR|FL 0.159 . SPBP4H10.10 97 RFLLPPK|FH 0.059 . SPBP4H10.10 101 PPKFHYR|LS 0.085 . SPBP4H10.10 110 PPPGEFK|SS 0.075 . SPBP4H10.10 114 EFKSSPR|VA 0.098 . SPBP4H10.10 138 WHWDLAR|DE 0.111 . SPBP4H10.10 143 ARDEAIR|LH 0.080 . SPBP4H10.10 148 IRLHDFK|RF 0.067 . SPBP4H10.10 149 RLHDFKR|FR 0.263 . SPBP4H10.10 151 HDFKRFR|FM 0.110 . SPBP4H10.10 168 FNLYEGR|WW 0.089 . SPBP4H10.10 202 LSIVVYK|FG 0.071 . SPBP4H10.10 207 YKFGVWK|AL 0.080 . SPBP4H10.10 226 NYVALQR|MM 0.076 . SPBP4H10.10 243 LPNGPTK|VW 0.073 . SPBP4H10.10 251 WDLLFPK|GP 0.059 . SPBP4H10.10 259 PYPPISR|PA 0.072 . SPBP4H10.10 275 EYGPIIR|TA 0.093 . SPBP4H10.10 320 FFVYPVK|AG 0.057 . SPBP4H10.10 342 CLLNYEK|KF 0.061 . SPBP4H10.10 343 LLNYEKK|FH 0.108 . SPBP4H10.10 371 LLPAMWK|RR 0.054 . SPBP4H10.10 372 LPAMWKR|RS 0.155 . SPBP4H10.10 373 PAMWKRR|SL 0.342 . SPBP4H10.10 382 YCVGIVK|KR 0.056 . SPBP4H10.10 383 CVGIVKK|RI 0.083 . SPBP4H10.10 384 VGIVKKR|IW 0.218 . SPBP4H10.10 389 KRIWSNK|AK 0.080 . SPBP4H10.10 391 IWSNKAK|A- 0.096 . ____________________________^_________________

  • Fasta :-

    >SPBP4H10.10 ATGTGTATATCATCCAGCTCTTTATTGTGTGGTATCAATTCTCTCAAATATGCTTCAAAT CGCGTGGGAATTTTAATCCCACCTTTCCAAACAGCTAGTTCTTTAAATATTTTTCGCCCA TATGTGATTTTTTCCCGTAGCCATCGTTCTTTGTCATCCGTTGACGTCTCATCGCCTTCT CTACCTTTGCGAGAGCATTTGCCACTCAAGAATGTATATTCACAAGTCCCTCTTTTGCCA GTGTGGAGTCCGATACCAAAAGGACCTAGACGATTTCTATTACCCCCAAAATTTCACTAC CGTCTTTCTCCACCGCCAGGTGAGTTTAAATCCAGTCCACGTGTGGCAATTATGGTTGCT GTAATAGTTTGTCTTGTTAATGGAGTTGTCTTTTGGCATTGGGACTTAGCTAGGGATGAA GCTATTAGATTGCATGACTTCAAACGGTTTCGGTTTATGATGACCCATGCGCAAGCTTCT TTATTCAATTTGTATGAAGGCCGGTGGTGGACATTGGTAGTTAGCATCTTTTCGCATCAG AATTTAGCACATCTACTTGTAAATTGTGTTGCTATTTACTCTTTTTTAAGCATTGTCGTT TACAAATTTGGTGTCTGGAAAGCTTTATCCGTGTATCTCGGTGCCGGCGTATTTGGCAAT TATGTTGCACTTCAAAGGATGATGAATGAAGAGAATCCATTTGCTACTCTTCCTAACGGC CCTACTAAGGTATGGGACTTGCTTTTTCCAAAAGGTCCATATCCTCCCATCTCAAGACCT GCTTTGTACTTGGGCAGCAATCCGGAATATGGACCTATTATTCGTACCGCTACGTTTGTC CCCCAAAGTTGGGCTACTGGATTACTTGGAGCATCTGGAGCTGTTTATGCTACCGCAGCA ATTTTTGCTTGTTTGTTTCCCTACACAGAGTTTTTCCTATTTTTCGTGTATCCCGTCAAG GCTGGTATATTTATGCCACTCGATTTTATTGCAGAATATGTTCTTTGTCTTCTCAATTAT GAAAAAAAGTTTCATGTTGCTTTTGACGCTCATGTTTCAGGTACATTCTTTGGTGTTGTC AGCTCTCTTTTTCTTTTACCAGCCATGTGGAAGAGAAGAAGTTTGTATTGTGTAGGAATT GTTAAAAAAAGGATCTGGTCAAACAAAGCTAAGGCTTGA
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  • Fasta :-

    MCISSSSLLCGINSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPS LPLREHLPLKNVYSQVPLLPVWSPIPKGPRRFLLPPKFHYRLSPPPGEFKSSPRVAIMVA VIVCLVNGVVFWHWDLARDEAIRLHDFKRFRFMMTHAQASLFNLYEGRWWTLVVSIFSHQ NLAHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVALQRMMNEENPFATLPNG PTKVWDLLFPKGPYPPISRPALYLGSNPEYGPIIRTATFVPQSWATGLLGASGAVYATAA IFACLFPYTEFFLFFVYPVKAGIFMPLDFIAEYVLCLLNYEKKFHVAFDAHVSGTFFGVV SSLFLLPAMWKRRSLYCVGIVKKRIWSNKAKA

    No Results
No Results
No Results
IDSitePeptideScoreMethod
SPBP4H10.1052 SHRSLSSVDV0.995unsp

SPBP4H10.10      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India