SPBP8B7.24c | autophagy associated protein Atg8

_IDPredictionOTHERSPmTPCS_Position
SPBP8B7.24cOTHER0.9998520.0000540.000094
No Results

  • Fasta :-

    >SPBP8B7.24c MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVFP F
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/442 Sequence name : 442 Sequence length : 121 VALUES OF COMPUTED PARAMETERS Coef20 : 3.984 CoefTot : -0.021 ChDiff : 1 ZoneTo : 6 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.000 1.624 0.070 0.662 MesoH : -0.845 0.261 -0.460 0.201 MuHd_075 : 30.966 14.845 6.831 3.957 MuHd_095 : 18.643 8.938 3.338 5.403 MuHd_100 : 16.715 9.507 3.023 4.612 MuHd_105 : 8.558 7.461 1.506 2.805 Hmax_075 : -7.233 -1.283 -4.605 -0.163 Hmax_095 : -9.500 -3.700 -5.652 0.500 Hmax_100 : -14.200 -4.100 -6.587 -0.150 Hmax_105 : -19.700 -7.900 -8.328 -2.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8296 0.1704 DFMC : 0.8289 0.1711
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 121 SPBP8B7.24c MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFI 80 DEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVFPF 160 ................................................................................ 80 ......................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPBP8B7.24c 2 -----MR|SQ 0.138 . SPBP8B7.24c 6 -MRSQFK|DD 0.073 . SPBP8B7.24c 13 DDFSFEK|RK 0.060 . SPBP8B7.24c 14 DFSFEKR|KT 0.243 . SPBP8B7.24c 15 FSFEKRK|TE 0.093 . SPBP8B7.24c 20 RKTESQR|IR 0.110 . SPBP8B7.24c 22 TESQRIR|EK 0.109 . SPBP8B7.24c 24 SQRIREK|YP 0.072 . SPBP8B7.24c 28 REKYPDR|IP 0.081 . SPBP8B7.24c 35 IPVICEK|VD 0.056 . SPBP8B7.24c 38 ICEKVDK|SD 0.087 . SPBP8B7.24c 46 DIAAIDK|KK 0.059 . SPBP8B7.24c 47 IAAIDKK|KY 0.075 . SPBP8B7.24c 48 AAIDKKK|YL 0.123 . SPBP8B7.24c 65 QFVYVIR|KR 0.076 . SPBP8B7.24c 66 FVYVIRK|RI 0.066 . SPBP8B7.24c 67 VYVIRKR|IK 0.124 . SPBP8B7.24c 69 VIRKRIK|LS 0.060 . SPBP8B7.24c 74 IKLSPEK|AI 0.065 . SPBP8B7.24c 99 TIYEEHK|SE 0.080 . ____________________________^_________________

  • Fasta :-

    >SPBP8B7.24c ATTTATTACGAAATAAGGTAACTTATCATAGTATCATAAGATTGCTTCATATCTCTGTAT ACGTTACCCAAGGGTACGCTTATTTATCCAAGACCGTATACCACATAACTCACGCACCGT TTACAAAGAACACCGAATTTTGAAGCAATTGAAGAGAGGAGTTACTACTTCAAGCAAGAA GTTTGAGAGTTCTCATGCGTTCTCAATTCAAGGACGACTTTTCTTTTGAGAAACGAAAAA CAGAGTCTCAAAGAATCCGGGAAAAATATCCCGATCGAATACCTGTTATTTGCGAGAAAG TTGATAAATCTGATATTGCTGCAATAGATAAAAAGAAATATCTCGTTCCATCTGACCTTA CAGTTGGTCAATTTGTATATGTTATTCGCAAACGGATAAAACTTTCTCCTGAGAAGGCCA TCTTTATTTTCATTGATGAAATCTTGCCCCCGACAGCGGCCTTGATGTCAACGATATACG AAGAGCATAAAAGTGAGGACGGCTTTTTGTATATCACGTATTCAGGAGAAAATACATTTG GAACAGTGTTTCCTTTTTAGATCAACAATTTGCCTGTTTTAAGATGGCCCCGCCTTCTTT TAATTGTGATCAGCAAAATTGTTTGTGGACAATGGTTGAATGATTCTTTATGTTTTTTTT ACTCTGCATTTCTAGCTTTTTAGCTTTCAAGTTTCTTTGCTTTTGCATTATGATTATTTT ACGCGCGTCTTATACATATCATTCTCAGGTTAGCCACCACGATTTTAAGGATGTTTCAGA TTTGTCTTACAATAGATGTGATGAACGCTTATGACTAGTTTGCTTTGACAACAAAGTTAT TTTACCTTGTTAATTAATAAAAACCATCAATTAAAAAAATTGATTTTGATTTTCTAATAA TATTAAAATGTTGATAAATAATAAGTAGATAT
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  • Fasta :-

    MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVFP F

    No Results
  • title: Atg7 interaction site
  • coordinates: R28,D37,K38,K46,Y49,G58,Q59,V61,Y62,V63,R65,K66,R67,P72,E73,A75,I76,F77,F79,E82,I83,L84,P86,T87,A88,E112,N113
No Results
No Results
IDSitePeptideScoreMethod
SPBP8B7.24c71 SRIKLSPEKA0.994unsp

SPBP8B7.24c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India