SPCC1682.10 | 19S proteasome regulatory subunit Rpn8 (predicted)

UniProt_ID: O74440

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0005515
Computed_GO_Functions: protein binding
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0005829 GO:1990023 GO:0005635 GO:0005634 GO:0000502 GO:0008541
Curated_GO_Components: cytosol mitotic spindle midzone nuclear envelope nucleus proteasome complex proteasome regulatory particle, lid subcomplex
Curated_GO_Function_IDs: GO:0003674
Curated_GO_Functions: molecular_function
Curated_GO_Processes: positive regulation of mitotic metaphase/anaphase transition proteasome-mediated ubiquitin-dependent protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	SPCC1682.10	OTHER	0.992963	0.006451	0.000586

No Results

Fasta :-
>SPCC1682.10 MPPAVSSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANS YAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLK KYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVE HLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSV FNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASK AMEQQDIKPTVQNGEVSANAEQKA
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/309 Sequence name : 309 Sequence length : 324 VALUES OF COMPUTED PARAMETERS Coef20 : 3.686 CoefTot : -1.862 ChDiff : -14 ZoneTo : 52 KR : 5 DE : 2 CleavSite : 43 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.706 0.114 0.599 MesoH : -0.487 0.487 -0.372 0.244 MuHd_075 : 35.591 28.821 9.721 7.236 MuHd_095 : 45.577 23.519 10.976 9.090 MuHd_100 : 47.096 21.642 11.829 9.057 MuHd_105 : 46.666 21.512 12.149 9.349 Hmax_075 : 13.067 27.475 5.002 4.912 Hmax_095 : 10.325 9.362 1.641 2.844 Hmax_100 : 9.700 11.900 1.290 3.470 Hmax_105 : 12.017 13.533 2.059 4.818 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6655 0.3345 DFMC : 0.6189 0.3811

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 324 SPCC1682.10 MPPAVSSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHN 80 FMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSR 160 TFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSV 240 FNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASKAMEQQDIKPTVQNGEVSANA 320 EQKA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC1682.10 33 AVDSYNR|SA 0.101 . SPCC1682.10 36 SYNRSAK|GT 0.209 . SPCC1682.10 39 RSAKGTK|RR 0.059 . SPCC1682.10 40 SAKGTKR|RV 0.271 . SPCC1682.10 41 AKGTKRR|VV 0.389 . SPCC1682.10 70 PFEEDEK|NA 0.063 . SPCC1682.10 90 SMNEMFK|KI 0.075 . SPCC1682.10 91 MNEMFKK|IN 0.111 . SPCC1682.10 97 KINANEK|LV 0.099 . SPCC1682.10 109 HTGPQLR|PS 0.098 . SPCC1682.10 120 EINNLLK|KY 0.060 . SPCC1682.10 121 INNLLKK|YI 0.095 . SPCC1682.10 134 LVIIDVK|PK 0.074 . SPCC1682.10 136 IIDVKPK|SV 0.118 . SPCC1682.10 157 IEDDGSK|SS 0.064 . SPCC1682.10 160 DGSKSSR|TF 0.102 . SPCC1682.10 184 GVEHLLR|DT 0.125 . SPCC1682.10 187 HLLRDTR|DA 0.395 . SPCC1682.10 197 VGTLATR|VT 0.080 . SPCC1682.10 211 LQGLGQR|LT 0.082 . SPCC1682.10 220 EIADYLR|KV 0.105 . SPCC1682.10 221 IADYLRK|VV 0.119 . SPCC1682.10 264 LESEAQR|AF 0.095 . SPCC1682.10 284 YISSIVR|AV 0.122 . SPCC1682.10 300 DSLAASK|AM 0.061 . SPCC1682.10 308 MEQQDIK|PT 0.065 . SPCC1682.10 323 SANAEQK|A- 0.081 . ____________________________^_________________

Fasta :-
>SPCC1682.10 ACGCTTTCAACCTTTCGTTTGCCATACACAGTTGAAGTTGTGAGAGACAAATTTTTAATA TAAACCGGTTATAATGCCTCCTGCAGTGAGCTCTGAAACCTCTACAATCGTCCCACAGCA AGTTATTGTGCATCCATTAGTACTTCTGTCAGCAGTAGATTCTTATAATCGATCTGCCAA GGGAACCAAAAGACGGGTCGTTGGTATTCTATTGGGTCAAAATAATGGCGACGTTGTAAA CGTGGCCAATAGTTATGCTATACCATTTGAGGAAGATGAAAAGAATGCATCGGTTTGGTT TTTGGACCATAATTTTATGGAATCAATGAATGAAATGTTTAAAAAAATCAATGCAAATGA AAAATTAGTTGGCTGGTATCATACTGGACCACAACTCCGACCCTCTGATTTGGAAATCAA CAACTTACTTAAAAAATACATACCCAATCCCGTTCTTGTCATTATCGATGTAAAGCCCAA ATCAGTGGGTCTTCCGACTAATGCCTACTTTGCCATTGATGAAATTGAAGACGACGGCTC TAAGTCCAGCAGAACTTTTGTTCATCTACCCTCCAGTATAGAGGCAGAGGAAGCAGAGGA AATTGGTGTTGAACACTTGTTACGTGATACTCGTGATGCATCCGTTGGTACTTTAGCGAC AAGAGTTACCCAGCAGGCACAATCTTTACAAGGCCTTGGGCAGCGTCTCACTGAAATCGC AGATTACTTAAGGAAAGTCGTGGATGGGCAACTACCTATAAATCATGCTATCCTTGCCGA GCTTCAGAGTGTGTTTAATCTTTTGCCTAACATTTTTAGCGGTCCTGTGGTTTCAGAACA GGCCTTGGAATCAGAGGCACAACGTGCTTTCAATGTGAATTCCAATGATCAGTTGATGTC CATTTATATTTCCAGCATCGTGAGGGCCGTGATTGCTCTTCATGATCTTTTGGATTCTTT GGCTGCTAGTAAAGCTATGGAACAGCAGGACATAAAGCCAACTGTTCAAAATGGAGAAGT TTCGGCTAATGCCGAACAAAAGGCTTAATCACTGTATTCATACTATCCATGTCTGGCTTC TATCATTTGTGGACTCCTCTTTCTGAGATTTAACGACTTTATCTAACGTAGGTTTTTTAT TTCAATGTCTAAGTATCATAGAGTTTTTATTTATATCTTGTCTTTTCGCAGACAGTTTTG CAGATATTTGTAACCCTCTTAACTTGTAAAAGTTACACGTCGGGTTCGGGTTTATTTGCT TGTATGTTAAAAATGATATGTCTACGTTTGTTAAATTGTATTTACGAAGGATAAAAGTGT AATTTTAAGTTAGTACGAAGAAATTGCATACAAAATATCATATTTTAATTTACAG
Download Fasta

Fasta :-

MPPAVSSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANS YAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLK KYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVE HLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSV FNLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASK AMEQQDIKPTVQNGEVSANAEQKA

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	SPCC1682.10	T	9	0.587	0.042	SPCC1682.10	S	6	0.569	0.107	SPCC1682.10	T	11	0.542	0.223	SPCC1682.10	S	7	0.531	0.069

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	SPCC1682.10	T	9	0.587	0.042	SPCC1682.10	S	6	0.569	0.107	SPCC1682.10	T	11	0.542	0.223	SPCC1682.10	S	7	0.531	0.069

SPCC1682.10 | 19S proteasome regulatory subunit Rpn8 (predicted)

ID's

UniProt_ID: O74440

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0005515

Computed_GO_Functions: protein binding

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0005829 GO:1990023 GO:0005635 GO:0005634 GO:0000502 GO:0008541

Curated_GO_Components: cytosol mitotic spindle midzone nuclear envelope nucleus proteasome complex proteasome regulatory particle, lid subcomplex

Curated_GO_Function_IDs: GO:0003674

Curated_GO_Functions: molecular_function

Curated_GO_Processes: positive regulation of mitotic metaphase/anaphase transition proteasome-mediated ubiquitin-dependent protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

SPCC1682.10

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India