SPCC1682.16 | 19S proteasome regulatory subunit Rpt4 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPCC1682.16OTHER0.9999530.0000240.000023
No Results

  • Fasta :-

    >SPCC1682.16 MSERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVL KQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYN MSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKT LLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGR RFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEI PLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDY VIQSDLMSAARKVADLKKLEGTIDYQKL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/444 Sequence name : 444 Sequence length : 388 VALUES OF COMPUTED PARAMETERS Coef20 : 3.588 CoefTot : 0.112 ChDiff : -4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.988 1.582 0.068 0.513 MesoH : -0.612 0.494 -0.339 0.240 MuHd_075 : 28.662 14.700 7.105 4.798 MuHd_095 : 5.253 14.034 3.238 2.329 MuHd_100 : 5.896 13.181 2.749 2.466 MuHd_105 : 6.414 9.260 1.802 2.517 Hmax_075 : -3.500 -2.300 -3.825 0.035 Hmax_095 : -10.000 3.600 -3.995 0.200 Hmax_100 : -5.400 2.400 -3.675 0.820 Hmax_105 : -5.338 0.875 -3.553 0.945 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9832 0.0168 DFMC : 0.9762 0.0238
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 388 SPCC1682.16 MSERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVV 80 GCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLR 160 VGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGR 240 RFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVS 320 KQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQKL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC1682.16 4 ---MSER|DT 0.091 . SPCC1682.16 10 RDTALEK|YK 0.067 . SPCC1682.16 12 TALEKYK|SY 0.078 . SPCC1682.16 19 SYLLQHR|EW 0.096 . SPCC1682.16 24 HREWDSK|LK 0.060 . SPCC1682.16 26 EWDSKLK|DL 0.076 . SPCC1682.16 29 SKLKDLR|FG 0.082 . SPCC1682.16 33 DLRFGNR|DL 0.103 . SPCC1682.16 37 GNRDLVK|KY 0.080 . SPCC1682.16 38 NRDLVKK|YD 0.114 . SPCC1682.16 41 LVKKYDK|TE 0.060 . SPCC1682.16 47 KTEDDIK|SL 0.078 . SPCC1682.16 61 IIGEVLK|QL 0.070 . SPCC1682.16 67 KQLDSER|FI 0.097 . SPCC1682.16 71 SERFIVK|AS 0.068 . SPCC1682.16 77 KASSGPR|YV 0.163 . SPCC1682.16 83 RYVVGCR|NN 0.076 . SPCC1682.16 96 HLVQGVR|VS 0.071 . SPCC1682.16 108 TTLTIMR|IL 0.072 . SPCC1682.16 112 IMRILPR|EV 0.153 . SPCC1682.16 142 GLNEQIR|EL 0.126 . SPCC1682.16 145 EQIRELR|EV 0.219 . SPCC1682.16 153 VIELPLK|NP 0.055 . SPCC1682.16 160 NPELFLR|VG 0.077 . SPCC1682.16 164 FLRVGIK|PP 0.066 . SPCC1682.16 167 VGIKPPK|GV 0.076 . SPCC1682.16 179 GPPGTGK|TL 0.059 . SPCC1682.16 184 GKTLLAR|AV 0.148 . SPCC1682.16 196 LGVNFLK|VV 0.085 . SPCC1682.16 205 SSAIVDK|YI 0.104 . SPCC1682.16 212 YIGESAR|II 0.113 . SPCC1682.16 215 ESARIIR|EM 0.253 . SPCC1682.16 222 EMFGYAK|EH 0.062 . SPCC1682.16 240 IDAIGGR|RF 0.092 . SPCC1682.16 241 DAIGGRR|FS 0.126 . SPCC1682.16 250 EGTSADR|EI 0.074 . SPCC1682.16 254 ADREIQR|TL 0.111 . SPCC1682.16 273 DYLGQTK|II 0.058 . SPCC1682.16 280 IIMATNR|PD 0.078 . SPCC1682.16 290 LDPALLR|PG 0.069 . SPCC1682.16 293 ALLRPGR|LD 0.199 . SPCC1682.16 296 RPGRLDR|KI 0.353 . SPCC1682.16 297 PGRLDRK|IE 0.069 . SPCC1682.16 308 LPNEVGR|ME 0.121 . SPCC1682.16 313 GRMEILK|IH 0.061 . SPCC1682.16 318 LKIHLEK|VS 0.080 . SPCC1682.16 321 HLEKVSK|QG 0.065 . SPCC1682.16 332 DYEALVK|LT 0.059 . SPCC1682.16 343 TNGADLR|NV 0.112 . SPCC1682.16 355 AGFIAIK|ED 0.060 . SPCC1682.16 358 IAIKEDR|DY 0.105 . SPCC1682.16 371 DLMSAAR|KV 0.109 . SPCC1682.16 372 LMSAARK|VA 0.099 . SPCC1682.16 377 RKVADLK|KL 0.068 . SPCC1682.16 378 KVADLKK|LE 0.109 . SPCC1682.16 387 GTIDYQK|L- 0.057 . ____________________________^_________________

  • Fasta :-

    >SPCC1682.16 AAAATACCGAGTAATTGGATTCCCATTTGCTAGTATGTTCTGACCAGAACTAACACATCT TTTGCGAAATAACCATGTCGGAAAGAGACACTGCTTTAGAGAAATATAAATCCTATTTAT TACAACATCGAGAATGGGATTCAAAACTGAAGGATTTGCGTTTTGGAAATCGAGATCTAG TCAAGAAATATGATAAAACAGAGGATGATATAAAAAGCTTGCAGTCGGTTGGTCAGATTA TTGGAGAAGTATTGAAACAACTTGATTCTGAAAGATTCATTGTAAAAGCTAGCTCTGGTC CACGTTACGTTGTAGGTTGCAGAAACAATGTCGACCAATCTCATTTGGTTCAAGGCGTTC GTGTATCTTTAGATATGACCACGTTAACCATTATGCGTATTCTTCCTCGTGAGGTTGATC CTCTCGTTTACAATATGTCAATTGAAGACCCTGGTGACATTTCTTTCGCCGGTGTCGGTG GCTTGAATGAACAAATTCGTGAATTGCGTGAAGTTATTGAACTACCTTTAAAGAATCCGG AATTATTCCTTCGTGTGGGAATTAAGCCACCAAAAGGTGTTTTGCTCTATGGTCCTCCTG GTACTGGTAAAACTCTTTTAGCTCGTGCCGTGGCGGCATCTTTAGGTGTTAACTTTTTAA AAGTAGTTTCCAGTGCTATCGTTGATAAATATATTGGAGAATCTGCTAGAATAATTCGTG AAATGTTTGGCTATGCAAAAGAGCATGAGCCATGTGTTATTTTTATGGACGAAATTGATG CTATTGGTGGTAGAAGATTCTCTGAAGGAACATCTGCTGATCGTGAAATTCAGCGTACAT TGATGGAATTATTGAATCAGATGGATGGTTTCGATTACCTTGGCCAAACGAAAATTATCA TGGCGACAAATCGTCCTGATACTCTAGATCCTGCCTTGCTTCGTCCTGGTCGTCTAGATC GTAAAATTGAAATTCCCCTACCAAACGAAGTTGGTCGTATGGAGATTTTGAAAATCCATT TAGAAAAAGTCTCTAAACAAGGCGAAATTGACTATGAAGCATTGGTTAAACTGACAGATG GAACAAATGGTGCTGACTTGCGGAATGTGGTTACAGAAGCAGGATTCATAGCCATTAAAG AAGATCGCGACTATGTCATTCAGTCCGATTTAATGTCCGCAGCTCGTAAGGTTGCTGACC TGAAGAAACTTGAAGGTACAATTGATTACCAAAAGCTTTAGTGCACATATATCCAAAAAG CCATGAAATGATAAGTTTACCGATGAAGATTATACGCGCAACTGCATAGTTATGATTAAA AAGGTCGAATAGTAAGTGAAACGTTTACTTTTAATATATTCCGACTCTTTTGGCTTTTAT CATGTATATATGAATATGCTTGATGGGAATCTATGTATATTATCGTAAGGCATATCTGTG ATAGTACAAACTGATTTTCTTCAATATTTGATTATGTTTTCCATATCCTCCAAATACCAA ACATTGTTTTTCCACTCTACATAATTTACTGGCGACAAAAGAAAAAATGATCAAGTAAAA ATAAACAATTAATTATACACATGAA
  • Download Fasta

  • Fasta :-

    MSERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVL KQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYN MSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKT LLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGR RFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEI PLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDY VIQSDLMSAARKVADLKKLEGTIDYQKL

  • title: ATP binding site
  • coordinates: P174,P175,G176,T177,G178,K179,T180,L181,D232,N279
No Results
No Results
IDSitePeptideScoreMethod
SPCC1682.16243 SGRRFSEGTS0.994unsp

SPCC306.01      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India