SPCC1795.04c | 20S proteasome complex subunit alpha 7, Pre10 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPCC1795.04cOTHER0.9991950.0007570.000048
No Results

  • Fasta :-

    >SPCC1795.04c MSSIGTGYDLGLFFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKP RVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQ LFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNF SSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVPDELLQEAEAYARR IADGEEEDIAMQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/285 Sequence name : 285 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 3.457 CoefTot : -0.433 ChDiff : -11 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.053 1.218 0.126 0.437 MesoH : -0.435 0.176 -0.342 0.200 MuHd_075 : 10.122 7.493 2.075 1.801 MuHd_095 : 15.106 4.800 4.608 1.842 MuHd_100 : 15.483 7.340 4.465 2.996 MuHd_105 : 12.489 8.365 3.382 3.436 Hmax_075 : 14.817 7.933 1.335 4.503 Hmax_095 : 11.000 6.100 1.640 3.820 Hmax_100 : 13.200 9.100 2.382 4.960 Hmax_105 : 12.500 7.467 1.628 4.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9928 0.0072 DFMC : 0.9871 0.0129
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 SPCC1795.04c MSSIGTGYDLGLFFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGF 80 IPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYN 160 GAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVPDELLQEAEAYARR 240 IADGEEEDIAMQE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ SPCC1795.04c 19 FFSPDGR|LF 0.081 . SPCC1795.04c 28 QAEYAYK|AV 0.082 . SPCC1795.04c 40 STCIGIK|CE 0.063 . SPCC1795.04c 51 VILALEK|VV 0.060 . SPCC1795.04c 56 EKVVTSK|LL 0.063 . SPCC1795.04c 59 VTSKLLK|PR 0.058 . SPCC1795.04c 61 SKLLKPR|VN 0.098 . SPCC1795.04c 65 KPRVNNR|IG 0.109 . SPCC1795.04c 71 RIGSVDR|HI 0.169 . SPCC1795.04c 89 DGQHIVK|RA 0.071 . SPCC1795.04c 90 GQHIVKR|AR 0.296 . SPCC1795.04c 92 HIVKRAR|DE 0.114 . SPCC1795.04c 99 DEATSWR|DN 0.125 . SPCC1795.04c 114 GTVIADR|LG 0.079 . SPCC1795.04c 129 TCYSSVR|PF 0.096 . SPCC1795.04c 166 NGAAAGK|GR 0.066 . SPCC1795.04c 168 AAAGKGR|QV 0.177 . SPCC1795.04c 172 KGRQVAR|NE 0.107 . SPCC1795.04c 177 ARNELEK|LN 0.075 . SPCC1795.04c 184 LNFSSLK|MK 0.075 . SPCC1795.04c 186 FSSLKMK|DA 0.112 . SPCC1795.04c 190 KMKDAVK|EA 0.069 . SPCC1795.04c 194 AVKEAAR|IL 0.091 . SPCC1795.04c 206 HDEENNK|EH 0.068 . SPCC1795.04c 239 EAEAYAR|RI 0.099 . SPCC1795.04c 240 AEAYARR|IA 0.252 . ____________________________^_________________

  • Fasta :-

    >SPCC1795.04c GCACATATATAACGAGTGTGACTGTTCTACGCTCCTTGCTGACTAGTCATCAGTCTACGC ATGCCAACTACCACCAACATAAGCAAATGAGTTCAATTGGTACTGGATACGATTTAGGAT TATTCTTCTCCCCGGATGGTCGTTTATTCCAAGCGGAGTACGCGTATAAAGCCGTCGAAA ATGCAAGTACTTGCATTGGAATAAAATGTGAAGATGGAGTTATTCTAGCTCTAGAAAAGG TAGTTACTAGCAAACTACTTAAGCCGCGAGTAAATAACAGAATTGGGTCGGTCGATCGAC ACATTGGTATTGCTACTACTGGCTTTATTCCTGATGGCCAACACATCGTAAAACGTGCAA GGGACGAAGCCACCTCATGGAGAGATAACTACGGATCTCCCATCCCTGGAACAGTTATTG CTGATCGCTTGGGGAACTACGTTCAACTTTTCACTTGCTATTCTAGCGTCCGTCCATTCG GTGTTATGTCTTTTGTTGCTACTTATGACTCAGAAGGTCCACATTTGTATATGGTTGAAC CTAATGGTGTTTATTGGGGTTACAACGGTGCTGCAGCTGGTAAAGGTCGGCAAGTAGCTC GAAACGAATTAGAAAAACTGAATTTTTCCTCATTAAAAATGAAAGATGCGGTTAAAGAAG CTGCTAGAATATTATACGCAACTCATGACGAAGAAAACAACAAAGAGCATGAAATTGAGA TGACTTGGGTTGGTGTTGAAACAAACGGTATTCATACACCCGTTCCTGATGAGCTTTTGC AAGAGGCTGAAGCATATGCTCGTCGGATTGCTGATGGCGAAGAAGAGGATATTGCTATGC AAGAGTAAATGTCATATGATTCCTATTATACTATGTTATGATTTCCCATTTTTATTCTCT CTTCATGCCTTTTTATTACCCTACTGACCTCTTCCTCTCCTTTTCTTATTTTTCCTCCAA AATTTTAGCCAAGTCTTTGTCTCTCGATTAGCTATTCCATCTTCCGTAACCGTCAATTAT AAACAATTTTACGAGAACGATTATCTATAGATTCCTTTTATCGCTTTTCTTATAGAATCA ATACACCCGTTTAAGGAATTAACATTTTTATCTTGTTAGAATATGGCAGATTCTACTTCC TTAAATCTTTGGAGTTATAATCTTCTTCCCAACTTTAATTCGGGTCTATCGATTTGATAT TTAATGTGTATATGTATTGACCTATTTACTACATTTTCACAGTGATATTAAACAAGTAAA CATTTTTAGCATTGCGTGA
  • Download Fasta

  • Fasta :-

    MSSIGTGYDLGLFFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKP RVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQ LFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNF SSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVPDELLQEAEAYARR IADGEEEDIAMQE

    No Results
  • title: active site
  • coordinates: S34,E50,V52,R65,K166
No Results
No Results
IDSitePeptideScoreMethod
SPCC1795.04c97 SDEATSWRDN0.998unsp

SPCC1795.04c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India