SPCC576.10c | 19S proteasome regulatory subunit Rpt3 (predicted)

_IDPredictionOTHERSPmTPCS_Position
SPCC576.10cOTHER0.9999430.0000470.000011
No Results

  • Fasta :-

    >SPCC576.10c MNSTEEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQ FLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSI SMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTG KTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIA TKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKI EFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKS RGVILQSDIEEAYARAVKPTDMEQFAFYK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/864 Sequence name : 864 Sequence length : 389 VALUES OF COMPUTED PARAMETERS Coef20 : 3.829 CoefTot : -0.022 ChDiff : -6 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.647 1.153 -0.017 0.472 MesoH : -0.731 0.312 -0.386 0.167 MuHd_075 : 17.587 8.335 3.735 3.890 MuHd_095 : 14.705 11.399 5.693 2.879 MuHd_100 : 5.353 6.063 1.488 2.919 MuHd_105 : 21.601 7.871 4.458 5.129 Hmax_075 : -11.550 -1.400 -5.598 0.443 Hmax_095 : -15.400 -2.100 -5.262 0.569 Hmax_100 : -14.400 -0.200 -5.749 1.010 Hmax_105 : -5.600 -1.283 -4.564 1.610 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8526 0.1474 DFMC : 0.9109 0.0891
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 389 SPCC576.10c MNSTEEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNY 80 VVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLY 160 RQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIA 240 TKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITA 320 KMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFAFYK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................................................P........ 320 ..................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ SPCC576.10c 12 EIDLYNR|WK 0.063 . SPCC576.10c 14 DLYNRWK|AL 0.090 . SPCC576.10c 18 RWKALER|QL 0.092 . SPCC576.10c 31 LQEGFIK|ED 0.068 . SPCC576.10c 35 FIKEDCK|SL 0.079 . SPCC576.10c 38 EDCKSLK|RE 0.055 . SPCC576.10c 39 DCKSLKR|EL 0.131 . SPCC576.10c 43 LKRELIR|AQ 0.113 . SPCC576.10c 49 RAQEEVK|RI 0.064 . SPCC576.10c 50 AQEEVKR|IQ 0.152 . SPCC576.10c 83 GSNYVVR|IL 0.134 . SPCC576.10c 90 ILSTLDR|EL 0.084 . SPCC576.10c 94 LDRELLK|PS 0.061 . SPCC576.10c 103 ASVALQR|HS 0.100 . SPCC576.10c 124 SSISMLR|PD 0.086 . SPCC576.10c 128 MLRPDER|PD 0.080 . SPCC576.10c 143 GGLDVQK|QE 0.057 . SPCC576.10c 147 VQKQEVR|EA 0.085 . SPCC576.10c 161 TQGDLYR|QI 0.137 . SPCC576.10c 169 IGIDPPR|GV 0.117 . SPCC576.10c 181 GPPGTGK|TM 0.057 . SPCC576.10c 186 GKTMLVK|AV 0.075 . SPCC576.10c 198 TAANFIR|VV 0.228 . SPCC576.10c 207 GSEFVQK|YL 0.120 . SPCC576.10c 214 YLGEGPR|MV 0.178 . SPCC576.10c 217 EGPRMVR|DV 0.315 . SPCC576.10c 221 MVRDVFR|MA 0.151 . SPCC576.10c 224 DVFRMAR|EN 0.211 . SPCC576.10c 242 IDAIATK|RF 0.066 . SPCC576.10c 243 DAIATKR|FD 0.185 . SPCC576.10c 252 AQTGADR|EV 0.095 . SPCC576.10c 256 ADREVQR|IL 0.128 . SPCC576.10c 275 DQGANVK|VI 0.061 . SPCC576.10c 282 VIMATNR|AD 0.076 . SPCC576.10c 292 LDPALLR|PG 0.069 . SPCC576.10c 295 ALLRPGR|LD 0.218 . SPCC576.10c 298 RPGRLDR|KI 0.209 . SPCC576.10c 299 PGRLDRK|IE 0.072 . SPCC576.10c 306 IEFPSYR|DR 0.108 . SPCC576.10c 308 FPSYRDR|RQ 0.093 . SPCC576.10c 309 PSYRDRR|QR 0.404 . SPCC576.10c 311 YRDRRQR|RL 0.267 . SPCC576.10c 312 RDRRQRR|LV 0.769 *ProP* SPCC576.10c 321 FQTITAK|ML 0.059 . SPCC576.10c 336 LDTFIMR|PD 0.088 . SPCC576.10c 358 AGLLAVR|KS 0.076 . SPCC576.10c 359 GLLAVRK|SR 0.132 . SPCC576.10c 361 LAVRKSR|GV 0.407 . SPCC576.10c 375 IEEAYAR|AV 0.127 . SPCC576.10c 378 AYARAVK|PT 0.170 . SPCC576.10c 389 EQFAFYK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >SPCC576.10c ACGTTTCCCAATACCTTTATTTCTAGCAACTACCACATACGCAAAATGAATAGTACAGAG GAAATTGATTTGTACAATCGCTGGAAAGCGCTAGAGCGCCAATTAGAAATGCTGGATTTA CAAGAAGGATTCATCAAAGAAGACTGTAAATCACTCAAGCGAGAATTAATAAGAGCACAA GAAGAAGTGAAACGAATACAATCTGTGCCTCTAGTAATCGGACAATTCTTGGAGGCCATT GATCAAAATACTGCTATTGTAGGAAGTACAACTGGATCTAATTATGTCGTTCGTATTTTA AGTACACTTGATCGAGAGCTTTTAAAACCTTCAGCAAGTGTCGCTCTTCAACGACACTCA AACGCTTTAGTCGACATTTTACCACCAGAAGCAGATTCATCTATTTCTATGCTTCGTCCA GATGAAAGACCTGATGTTTCTTATGCTGATGTTGGTGGTTTAGATGTTCAAAAGCAAGAA GTTCGTGAAGCCGTTGAATTACCTCTAACACAAGGCGATCTTTATCGTCAGATTGGTATT GATCCTCCTAGAGGCGTTTTACTTTACGGTCCTCCAGGTACCGGTAAAACAATGCTTGTA AAAGCTGTGGCCAACTCAACAGCTGCCAACTTTATTCGTGTTGTTGGATCTGAATTTGTT CAAAAATACCTTGGTGAGGGTCCACGTATGGTTCGAGATGTATTTAGAATGGCACGTGAA AATGCTCCTGCTATTATTTTTATTGATGAAATTGATGCTATTGCTACAAAGCGTTTTGAT GCCCAAACCGGTGCTGATCGTGAAGTCCAACGTATTTTGATTGAACTTTTAACCCAGATG GATGGTTTTGATCAAGGTGCTAATGTTAAAGTAATCATGGCTACTAATCGTGCCGACACT CTAGATCCTGCTCTTCTTCGTCCTGGCCGTTTAGATCGAAAAATTGAATTTCCTTCCTAC CGCGATCGTCGCCAACGTCGACTTGTTTTCCAAACCATCACAGCTAAAATGTTGCTTTCT CCCGAGGTTGACTTGGATACATTTATTATGCGACCAGATGCATCTAGTGGTGCTCAAATT GCTGCCATCATGCAAGATGCAGGTCTTTTAGCTGTGCGAAAGAGTCGTGGCGTCATCCTT CAAAGCGACATTGAAGAGGCTTATGCTCGTGCCGTTAAGCCTACAGATATGGAACAGTTT GCTTTCTATAAATAAATGTTCGTCGATACATGTCTTTATGACCCGCAGCCCATTGTTTTA TTGCATCTTTCTTACCATGATAAGACAGATATTGAAGCTTTGAGTTGCACATTTATTCCC TTACGTCTCCTTCCTACGAGTTATAAAATTATGCAAGTATGTCAAAACGTGCTTTTGTTT TACGTATTGAAAGGCATGTTATGAACAAAGACTGCGTTATGCCAATTTCACCTTACCATA CATATTTGAAAAGGTCCGAAAAGAAAGTTTACTTTGGAAACTTGTACGATTATTATGTAG AACAAGTAAACAGCAATTTAATGGGGTTTTACATCTTTTGTCGAAAAAAAAATTAGATAT CATAACCAGAAACATTAATAACATGTAAAAGTTCATTATTCCCGA
  • Download Fasta

  • Fasta :-

    MNSTEEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQ FLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSI SMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTG KTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIA TKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKI EFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKS RGVILQSDIEEAYARAVKPTDMEQFAFYK

    No Results
  • title: ATP binding site
  • coordinates: P176,P177,G178,T179,G180,K181,T182,M183,D234,N281
No Results
No Results
IDSitePeptideScoreMethod
SPCC576.10c304 SIEFPSYRDR0.995unsp

SPCC576.10c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India